PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101499_P02
Common NameZm.237
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 400aa    MW: 42554.7 Da    PI: 11.5493
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101499_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.4e-41158234177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCsrfh lsefDe krsCr+rLa+hn+rrrk+ 
  GRMZM2G101499_P02 158 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVATGGKQQRFCQQCSRFHVLSEFDEVKRSCRKRLAEHNRRRRKPP 234
                        6*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-34154220IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.359156233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-38157236IPR004333Transcription factor, SBP-box
PfamPF031106.2E-31159232IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
LTITQPLPPA PAAASSARSS SRPDPSTPLP VLHHLGISLA HLARAAANSR PAVRHTGDDD  60
REAERGHVVL ARRRRLPVHA HAAASAAAAS SSALRRVRAR PRRGGRRQPA RCRRGAAPPL  120
RRPRLRRLGA AVPAGGGAFG LGFGFGFGGA HHLQAPPRCQ AEGCKADLSG AKHYHRRHKV  180
CEYHAKASVV ATGGKQQRFC QQCSRFHVLS EFDEVKRSCR KRLAEHNRRR RKPPTTASSK  240
DAASPPANKK PNCGSITSSY STDNKNLNTA KSTMSSNTGS VISCLDQAAG NKQLQARPTL  300
TLGASPDRDQ LHHQLRAMLQ AQAAAGGGHH HHQEQHFITS LQVHNNDGCG GGNSSSSNNN  360
IILSCSSVCS SALPSANGEV SDQNNGNAGG MHNLFEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281592321184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112127RRGAAPPLRRPRLRRL
2215232KRSCRKRLAEHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1009980.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101499
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101499_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400940.0BT040094.1 Zea mays full-length cDNA clone ZM_BFc0064I19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105116.20.0SBP-domain protein 3
SwissprotA2YFT95e-65SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE85e-65SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A1D6LQH30.0A0A1D6LQH3_MAIZE; SBP-domain protein3
STRINGGRMZM2G101499_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-39squamosa promoter binding protein-like 8