PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G101058_P01 | ||||||||
Common Name | GATA28, LOC100281278, ZEAMMB73_252246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 373aa MW: 38552.7 Da PI: 8.1888 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.2e-18 | 275 | 310 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ GRMZM2G101058_P01 275 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 310 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.7E-16 | 269 | 319 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.227 | 273 | 305 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-14 | 273 | 333 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-13 | 273 | 307 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.12E-13 | 274 | 321 | No hit | No description |
Pfam | PF00320 | 1.3E-15 | 275 | 310 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 275 | 300 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MASEWEMAMG VELGMGMGGT YHHNASSITT APMMMSSHPH SHSGGAASYS TPHHHHYYGG 60 MPPMGDAMRV DDLLDLSTPG AGAHEFFPTA APATDKGHHS SGAMGEPSPT ANSSDHRTSA 120 LSFADEFYIP TEEAAELEWL SKFVDDSYSD MPNYSSATHA AMAAAAAAAA NAAGNGGGTT 180 SAGQDSGVAA APGRGARSRR SRATAAAAAV WHSLVPRPPS QSSPSSSSCS SSDFPSSNKP 240 ARPNGGSRGK KVPGPPGGGP AGGEAGLEGG GVRRCTHCAS EKTPQWRTGP LGPKTLCNAC 300 GVRFKSGRLM PEYRPAASPT FVLTQHSNSH RKVMELRRQK ELILIRGSHR DAAAGSAAGG 360 PRPELMFRDY GVC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23472 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G101058 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G101058_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068804 | 0.0 | BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds. | |||
GenBank | BT087798 | 0.0 | BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds. | |||
GenBank | EU956206 | 0.0 | EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147669.1 | 0.0 | uncharacterized LOC100281278 | ||||
TrEMBL | B6STZ1 | 0.0 | B6STZ1_MAIZE; GATA transcription factor | ||||
STRING | GRMZM2G101058_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 3e-43 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G101058_P01 |
Entrez Gene | 100281278 |
Publications ? help Back to Top | |||
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