PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100982_P01
Common NameEREB12, LOC103635354, ZEAMMB73_591751
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 263aa    MW: 28486.1 Da    PI: 10.3045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100982_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19108158256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  GRMZM2G100982_P01 108 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 158
                        59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-27107165No hitNo description
Gene3DG3DSA:3.30.730.105.8E-30108165IPR001471AP2/ERF domain
PROSITE profilePS5103222.695108165IPR001471AP2/ERF domain
SMARTSM003809.7E-32108171IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-22108165IPR016177DNA-binding domain
PfamPF008473.4E-13109158IPR001471AP2/ERF domain
PRINTSPR003671.9E-9109120IPR001471AP2/ERF domain
PRINTSPR003671.9E-9131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDASLRTLPP AGSSFRGEVR SAVSSLLLSS RGTSALDSSF FSHLPPLGSS VYYRQCELLR  60
NFAASQTQQS AAAACSPSSS SSGLQLQTPV PHDDATAAAA ATLLRQKLYR GVRQRQWGKW  120
VAEIRLPQNR VRVWLGTYDS PETAAHAYDR AAHRLRGEYA RLNFPGVMDG PPGADCPDHL  180
RRLRAAVDAK IQAIRARRQQ RNKRESARSG ANAKLPTARP IASETSTTPD GVLSVSPASA  240
DGGCPLDRMP SFDSELIWEM LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18105165263ATERF1
3gcc_A5e-18105165263ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100982
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100982_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282780.0KJ728278.1 Zea mays clone pUT6557 AP2-EREBP transcription factor (EREB12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656052.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-32ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLK7UTJ80.0K7UTJ8_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G100982_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]