PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100727_P01
Common NameEREB133, Zm.26009
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 297aa    MW: 31253.3 Da    PI: 8.5714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100727_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1992141255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  GRMZM2G100727_P01  92 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 141
                        69*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.26492149IPR001471AP2/ERF domain
CDDcd000181.87E-1992151No hitNo description
SuperFamilySSF541715.36E-2292150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3292150IPR001471AP2/ERF domain
SMARTSM003803.9E-3692155IPR001471AP2/ERF domain
PfamPF008471.9E-1392141IPR001471AP2/ERF domain
PRINTSPR003672.8E-1193104IPR001471AP2/ERF domain
PRINTSPR003672.8E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MHGARGSQRR GQKRDAADAR YISVALQPNA TSCARVVVLC CVPVWLCAHL DLHIVSTHAG  60
GERAVHDDVQ RAAAMEGHYS PTAAPEVSGE RRFRGVRQRP WGKWAAEIRD PHKAARVWLG  120
TFETAEAAAR AYDEAALRFR GSRAKLNFPE DARLTTPSSA AATAATAAAG STRTMAVAST  180
GGYPASAASA DYLQYQMFLQ GPQGATSGSH GGGYPLYYDY GGHSGVGDGS VSSSSGSYSF  240
PASTVTVASV PSSAPSYDEA AQWTSWPESS ASAWSYPATT GSWSASSQYP PSTRPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2393149663ATERF1
3gcc_A4e-2393149663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.260090.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100727
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100727_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278680.0KJ727868.1 Zea mays clone pUT5960 AP2-EREBP transcription factor (EREB133) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649697.21e-155ethylene-responsive transcription factor ABR1
TrEMBLK7V4W90.0K7V4W9_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G100727_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-26ethylene response factor 110