PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G100583_P01 | ||||||||
Common Name | LOC100285116, ZEAMMB73_313761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 24313.9 Da PI: 11.07 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.6 | 3.2e-29 | 22 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd + +a ++ e yfF+ r ++rat+sg+W+ g GRMZM2G100583_P01 22 LPPGFRFRPTDEELVVQYLRRKALGAPLPA-AVIPVVrDLYSLDPWDAVDvpaAPDAsSQGERYFFAVRPAGG--VGSARRATASGRWRPAG 110 79****************************.8899999********98522333333144599****998754..457889*********** PP NAM 88 kdkevlsk.....kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 k+k+v ++ lvg+k+ ++f k+ a + Wvmheyrl GRMZM2G100583_P01 111 KEKPVALPrpcggGSLLVGVKRAMAFVprrkkkKAAAAAALAIGWVMHEYRL 162 ******99899877777**********76543222333344779******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-40 | 19 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.842 | 22 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-21 | 23 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAAEGAPVLV RHAGGVEELR QLPPGFRFRP TDEELVVQYL RRKALGAPLP AAVIPVVRDL 60 YSLDPWDAVD VPAAPDASSQ GERYFFAVRP AGGVGSARRA TASGRWRPAG KEKPVALPRP 120 CGGGSLLVGV KRAMAFVPRR KKKKAAAAAA LAIGWVMHEY RLAAPLHKHG CSLAQAQGEW 180 VVCRVFQKGS GRPRRRRQRP VSPSPSSASS CVTDGSSSSS SDMDEVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-26 | 22 | 190 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-26 | 22 | 190 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-26 | 22 | 190 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-26 | 22 | 190 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-26 | 22 | 190 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-26 | 22 | 190 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-26 | 22 | 190 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | RRKKKK |
2 | 191 | 198 | RPRRRRQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95721 | 0.0 | glume| ovary| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G100583 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G100583_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086571 | 0.0 | BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds. | |||
GenBank | DQ245491 | 0.0 | DQ245491.1 Zea mays clone 16115 mRNA sequence. | |||
GenBank | EU970906 | 0.0 | EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151483.1 | 1e-161 | uncharacterized protein LOC100285116 | ||||
TrEMBL | A0A3L6EWT3 | 1e-160 | A0A3L6EWT3_MAIZE; NAC domain-containing protein 41 | ||||
TrEMBL | B6U0Z1 | 1e-160 | B6U0Z1_MAIZE; NAC domain containing protein 84 | ||||
STRING | GRMZM2G054252_P02 | 1e-112 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 2e-27 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G100583_P01 |
Entrez Gene | 100285116 |
Publications ? help Back to Top | |||
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