PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G100318_P01 | ||||||||
Common Name | ZEAMMB73_997394, Zm.162597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARR-B | ||||||||
Protein Properties | Length: 598aa MW: 66358.2 Da PI: 4.9984 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82 | 6.6e-26 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl GRMZM2G100318_P01 208 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVHGLTRENVASHLQKYRL 261 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 39 | 4.3e-14 | 57 | 151 | 26 | 109 |
EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT........TTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS Response_reg 26 vaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee........pklpiivvtahgeeedalealkaGakdflsKpfdpee 106 v+++ ++ al++l+e++ +D+++ D++mp+mdG++ll+ i e + + v++ ge + + + ++ Ga d+l Kp+ ++e GRMZM2G100318_P01 57 VTTCGLASVALQILRERRnkFDIVISDVNMPDMDGFKLLELIgLEMDlpvistklLQSVSTVMSIDGETSRVMKGVHHGACDYLLKPVRMKE 148 44666778899999888788**********************666666554433323444589999************************** PP HHH CS Response_reg 107 lvk 109 l++ GRMZM2G100318_P01 149 LRN 151 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.7E-143 | 2 | 592 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.42E-22 | 12 | 163 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-34 | 12 | 183 | No hit | No description |
SMART | SM00448 | 1.5E-17 | 13 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 32.161 | 14 | 157 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.1E-12 | 15 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.80E-20 | 16 | 156 | No hit | No description |
SuperFamily | SSF46689 | 8.96E-18 | 205 | 265 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.174 | 205 | 264 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 206 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 208 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-8 | 210 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MALADATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEDA MSDRTVIART GGISSCVTTC 60 GLASVALQIL RERRNKFDIV ISDVNMPDMD GFKLLELIGL EMDLPVISTK LLQSVSTVMS 120 IDGETSRVMK GVHHGACDYL LKPVRMKELR NIWQHVYRKK MHEVKEIEDG LDERGLFMRA 180 DTDTMRKRKE VDKDHADQDS SDGATAKKAR VVWSVDLHQK FVNAVNQIGF DKVGPKKILD 240 LMNVHGLTRE NVASHLQKYR LYLSRLQKQN EERIMGAARQ DFNQKGPSDN LNLRSSFQEQ 300 PGNLTNGFQH SSQKVQSQTN ILDPHLDDTK TSVPLKVPDK NGTSASDAAD HQNITGVSPL 360 GGGGVFSFER MPVNQDTKLS EAMILECQSW SGGVPPKQFM QYPKHNHERC DLLGDYSCLP 420 KPDLEHPIAP SHLYAPPPVI SMSCSVEGDV RDFSDVKPDL LGCMKSLSPA LTCTVESVSA 480 QLSDSVVSST NNDKKISSVE GLSSVKDCDF DQERNQAILL TSEEASILCS TDLTCLPDEL 540 SGYQLQGVSF GDIGLNSIDL FQCNDTMVLP GLQNNWYDDP DFSNETMEFP LLDGGLFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 207 | 266 | 4 | 63 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97951 | 0.0 | cell culture| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G100318 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G100318_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974774 | 0.0 | EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656969.1 | 0.0 | two-component response regulator ORR26 | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A1D6G6S9 | 0.0 | A0A1D6G6S9_MAIZE; Two-component response regulator | ||||
STRING | GRMZM2G100318_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-100 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G100318_P01 |
Publications ? help Back to Top | |||
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