PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100176_P01
Common NameZm.121710
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 369aa    MW: 39865.8 Da    PI: 7.5435
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100176_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31245300156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W++eLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GRMZM2G100176_P01 245 KARRCWSTELHRKFVAALDQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.646242302IPR017930Myb domain
SuperFamilySSF466891.79E-16243303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28243303IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-26245300IPR006447Myb domain, plants
PfamPF002492.1E-6247298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001180developmental stageplant proembryo stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGLDVMEIGM GADLSLDLRH FASKAVRQSK DDTPAPDMDA CIRRLEEERG KIEMFKRDLP  60
LCARLLADVI DVMKEEAGKK KTTTRRRSDR RLASAAADDE EEEADGATAD KSKWMSTAQL  120
WTGDSGREDA ESEKQDKGRC SPEARSRGAL LPFKADVGSG APAFAPLFLR TDDKAAAARV  180
GVPDLSSLLS PPATMPPADA GAEESRRQVV GFAQAAARAA AMAPSAPALG LQSQQQQQQQ  240
QQARKARRCW STELHRKFVA ALDQLGGPQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  300
NRRAPGSGVV RQPIVLVGGL WIPQEQGSPQ SGSPHGPLHH LSTSVAAVSS AATASCEEED  360
GRSESYGWK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1217100.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100176
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100176_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605030.0EU960503.1 Zea mays clone 225486 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148713.10.0myb-like DNA-binding domain, SHAQKYF class family protein
TrEMBLA0A1D6HRM90.0A0A1D6HRM9_MAIZE; Homeodomain-like superfamily protein
STRINGSb02g001600.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-44G2-like family protein