PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100146_P01
Common Namehdt102, ZEAMMB73_070282
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 303aa    MW: 32587.4 Da    PI: 4.3922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100146_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05278300223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++ + L+ H +  H
  GRMZM2G100146_P01 278 PCKSCSKTFNSEMALQAHSKAkH 300
                        6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034277303IPR007087Zinc finger, C2H2
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFWGLEVKP GSTVKCEPGH GFILHVSQAA LGESKKSDSA LMYVKVDDKK LAIGTLSIDK  60
YPQIQFDLVF NKEFELSHTS KTTSVFFSGY KVEQPIEGDE MDLDSEDEEE ELNIPVIKEN  120
GKADGKEEQK NQEKAVAATA SKSSLGLEKK SKDDSDDSDE DESDDSDEDD SDDSDEGEGL  180
SPDEGDDDSS DEDDTSDDDE EETPTPKKPE AGKKRGAENA LKTPLSDKKA KVATPPAQKT  240
GGKKGATHVA TPHPAKGKTP ANNDKSTEKS PKSGGSVPCK SCSKTFNSEM ALQAHSKAKH  300
GAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.5000.0cell culture| ear| embryo| endosperm| leaf| meristem| pollen| root| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100146
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100146_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364960.0BT036496.1 Zea mays full-length cDNA clone ZM_BFb0119A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105631.10.0histone deacetylase HDT2
SwissprotQ9M4U50.0HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLB4FHA80.0B4FHA8_MAIZE; Histone deacetylase102
STRINGGRMZM2G100146_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-27histone deacetylase 3