PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099862_P03
Common NameGRF15, pco080442
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 312aa    MW: 34094 Da    PI: 9.521
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099862_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.54.7e-2370114145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        daepgrCrRtDGKkWRCsr++++++k+CErH++rg++rsrk++e 
  GRMZM2G099862_P03  70 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRGCHRSRKHVEG 114
                        79****************************************996 PP
2QLQ56.86.8e-201146237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       +FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  GRMZM2G099862_P03 11 PFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 46
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3081146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.8E-141144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.66870114IPR014977WRC domain
PfamPF088794.5E-1871113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQGVLSRVRR PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIKRSLNP WSSLGSSSLG  60
WAPFRSGSAD AEPGRCRRTD GKKWRCSRDA VGDQKYCERH IKRGCHRSRK HVEGRKATPT  120
TADPTMAVSG GSLLHSHAVA WQQQGKSSAA NVTDPFSLGS NRNLLDKQNL GDQFSVSTSM  180
DSFDFSSSHS SPNQAKVAFS PVAMQHEHDQ LYLVHGAGSS AENVNKSQDG QLLVSRETID  240
DGPLGEVFKG KSCQSASADI LTDHWTSTRD LRPPTGVLQM SSSNTVPAEN HTSNSSYLMA  300
RMANSQTVPT LH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.800030.0ear| embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099862
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099862_P03
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612810.0BT061281.1 Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds.
GenBankBT0680990.0BT068099.1 Zea mays full-length cDNA clone ZM_BFb0053A15 mRNA, complete cds.
GenBankBT0687000.0BT068700.1 Zea mays full-length cDNA clone ZM_BFb0375O24 mRNA, complete cds.
GenBankEU9546450.0EU954645.1 Zea mays clone 1475381 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666986.10.0putative growth-regulating factor 2 isoform X1
SwissprotQ6AWY11e-132GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A3L6FVQ30.0A0A3L6FVQ3_MAIZE; Growth-regulating factor 8
TrEMBLB6SPI00.0B6SPI0_MAIZE; GRF transcription factor
TrEMBLC0HG250.0C0HG25_MAIZE; Growth-regulating factor 2
TrEMBLC0PII00.0C0PII0_MAIZE; Uncharacterized protein
STRINGGRMZM2G099862_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-41growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]