PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099862_P01
Common NameGRF15, pco080442
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 369aa    MW: 39567.2 Da    PI: 9.5465
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099862_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.25.9e-23127171145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        daepgrCrRtDGKkWRCsr++++++k+CErH++rg++rsrk++e 
  GRMZM2G099862_P01 127 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRGCHRSRKHVEG 171
                        79****************************************996 PP
2QLQ56.58.5e-2068103237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        +FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  GRMZM2G099862_P01  68 PFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 103
                        9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-1167103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-1368101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.30868103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.668127171IPR014977WRC domain
PfamPF088795.7E-18128170IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGGRDVFLG AAARAPPPPP SCPFHGSATA TRSGGAQMLS FSSNGVAGLG LCSGASKMQG  60
VLSRVRRPFT PTQWMELEHQ ALIYKHFAVN APVPSSLLLP IKRSLNPWSS LGSSSLGWAP  120
FRSGSADAEP GRCRRTDGKK WRCSRDAVGD QKYCERHIKR GCHRSRKHVE GRKATPTTAD  180
PTMAVSGGSL LHSHAVAWQQ QGKSSAANVT DPFSLGSNRN LLDKQNLGDQ FSVSTSMDSF  240
DFSSSHSSPN QAKVAFSPVA MQHEHDQLYL VHGAGSSAEN VNKSQDGQLL VSRETIDDGP  300
LGEVFKGKSC QSASADILTD HWTSTRDLRP PTGVLQMSSS NTVPAENHTS NSSYLMARMA  360
NSQTVPTLH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.800030.0ear| embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099862
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099862_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687000.0BT068700.1 Zea mays full-length cDNA clone ZM_BFb0375O24 mRNA, complete cds.
GenBankEU9546450.0EU954645.1 Zea mays clone 1475381 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106041.10.0putative growth-regulating factor 2
SwissprotQ6AWY11e-140GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A3L6FVQ30.0A0A3L6FVQ3_MAIZE; Growth-regulating factor 8
TrEMBLB6SPI00.0B6SPI0_MAIZE; GRF transcription factor
STRINGGRMZM2G099862_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Representative plantOGRP1468944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-40growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]