PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G099461_P01 | ||||||||
Common Name | CA5P15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 203aa MW: 21295.6 Da PI: 4.5894 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.9 | 1.4e-15 | 80 | 162 | 19 | 100 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100 +lP+ r+k+i+++d d+k++++ea l++ a elf+ l+ + a +rrt++ + aa ++ + dfl+d +e GRMZM2G099461_P01 80 PALPVGRVKRIMRVDRDIKKVTSEAALLIAAATELFLGSLATGAHAAAARRSRRTVRAVHVRAAArAHRPTADFLLDCLAAEE 162 579**********************************************************88761566799*****987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.0E-19 | 80 | 143 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.51E-16 | 81 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-13 | 82 | 143 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSPATADEPS VAMEEQPGKE SEEAADAMEE QLGKESEEAA ESAEEVGQVE EEPEEGVDPA 60 EAMEKAGEEA EAEEGASLRP ALPVGRVKRI MRVDRDIKKV TSEAALLIAA ATELFLGSLA 120 TGAHAAAARR SRRTVRAVHV RAAARAHRPT ADFLLDCLAA EEEAPRARQT AGSARGGGGG 180 GGGNAKPLPR GTRRIDAFFQ KVT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.36438 | 0.0 | endosperm| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G099461 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G099461_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726958 | 0.0 | KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266687.1 | 1e-134 | histone-like transcription factor and archaeal histone family protein | ||||
TrEMBL | A0A060D557 | 1e-136 | A0A060D557_MAIZE; CCAAT-HAP5 transcription factor (Fragment) | ||||
STRING | GRMZM2G099461_P01 | 1e-137 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 | Representative plant | OGRP9472 | 12 | 13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G099461_P01 |