PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G099408_P01 | ||||||||
Common Name | LOC103655057, MADS25, ZEAMMB73_668770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27532.5 Da PI: 9.6109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.3 | 2.3e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+ r t+ +R +g+ KKA+EL +LC+++ +v+++++ GRMZM2G099408_P01 11 ISNNATRRATYKRRTQGLEKKASELATLCGIKLCVVVYGE 50 99************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.895 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.41E-23 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 9.68E-19 | 3 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MARKKVNLQW ISNNATRRAT YKRRTQGLEK KASELATLCG IKLCVVVYGE GEAQPKVWPS 60 HEEAKQLLLK FNGMLDVGSL KKTKNQEEFL HGRSLRLREQ VSKLDLENRE RETLDLLHDS 120 MCGGRLAGGE GRGKDELLSL REMVETKMRR IKARLQQLVG QGVLPPKPPL PAAPSSLQAQ 180 ASCYTYNNMQ SMALLEEHRH SQQDWRAVHN LAPNYSPFAG SSSEPVGCEV TTHPYNNLGA 240 CSGLPSA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G099408 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G099408_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727521 | 0.0 | KJ727521.1 Zea mays clone pUT5380 MADS transcription factor (MADS25) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008680091.1 | 0.0 | MADS-box transcription factor PHERES 2 | ||||
TrEMBL | A0A3L6F421 | 0.0 | A0A3L6F421_MAIZE; Agamous-like MADS-box protein AGL36 | ||||
TrEMBL | K7TUW3 | 0.0 | K7TUW3_MAIZE; MADS transcription factor | ||||
STRING | GRMZM2G099408_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-22 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G099408_P01 |
Entrez Gene | 103655057 |