PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099319_P01
Common NameHB84, umc1988
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 668aa    MW: 72679.9 Da    PI: 6.106
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099319_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-094044411954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  GRMZM2G099319_P01 404 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 441
                        665559******************************88 PP
2BELL120.57.1e-39267338172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  GRMZM2G099319_P01 267 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDMVAGAGAAKPYTAVALQTISRHFRCLKDAINDQI 338
                        689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-60194336IPR006563POX domain
PfamPF075266.3E-52200334IPR006563POX domain
PROSITE profilePS5007112.325382445IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-28384455IPR009057Homeodomain-like
CDDcd000861.44E-12385446No hitNo description
SMARTSM003893.6E-9385449IPR001356Homeobox domain
SuperFamilySSF466892.91E-17386452IPR009057Homeodomain-like
PfamPF059201.1E-17402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MATYYSSQGS EREPSQNMYS RDPGNGTASY PPLPSALGNL LYLNSPASGG PYTDFGGVQQ  60
DCIEMPEPGH PSVMSHDSSA REIEPDMLGQ QRRSFGLARG MKDEVLMRMM DGSGSHSSAA  120
DAIHDDAPNG IQLDFGVLGS HGPPAQGGQG SLSLSLNTHI MAPALPYWPV VKADMLSPHS  180
YDHGCGGGSG GLGSEPSRAI RNSRYLKAAQ ELLDEVVNVW NSIKQKAQKE QVEAGKTEGK  240
ENEGGGPKSE GPQESGANAA PELSTAEKQE LQNKMAKLMA MLDEVDRKYK HYYHQMQSVV  300
SSFDMVAGAG AAKPYTAVAL QTISRHFRCL KDAINDQISV IRKKLGEEES SSGREGRLTR  360
LRYIDQQLRQ QRAFQQYGMI PQNAWRPQRG LPENSVTILR AWLFEHFLHP YPKDSEKLML  420
ARQTGLTRSQ ISNWFINARV RLWKPMIEDM YKEETGDIEQ DSNSSSDNAP AGSKAKTASS  480
RDKEDHLARS CCTPRAVCES SSQLSEPPGG ASMRAMSVAA AAAGAPMGLF QNEPGHDHDH  540
DDSFMSLMLK EQRPNDGGGG LLLHHSAVAQ HQDENARFMA YHLAELGRYG NGNVSLTLGL  600
QRSSSSLSVP HAQQSFPGVG IGVGDDDIYN ATAAPLGVSV ASPDYESMSQ MDQRQRFEQS  660
PLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-17391448158Homeobox protein Meis1
4xrs_B8e-17391448158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.254810.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099319
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099319_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344680.0BT034468.1 Zea mays full-length cDNA clone ZM_BFc0173D19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131173.10.0uncharacterized protein LOC100192481
RefseqXP_008677487.10.0homeobox-transcription factor 84 isoform X1
SwissprotO656851e-114BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLB4FBI00.0B4FBI0_MAIZE; HB transcription factor
STRINGGRMZM2G099319_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-101BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]