PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G098986_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20509.3 Da PI: 10.3116 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.5 | 5.7e-26 | 86 | 135 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+ly y+s GRMZM2G098986_P01 86 RIQDRTSRQVRFSKRRSGLFKKAHELSVLCDAEVAMVVFSPAGRLYHYAS 135 89**********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.539 | 77 | 137 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-31 | 77 | 136 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.50E-34 | 79 | 147 | No hit | No description |
PRINTS | PR00404 | 7.3E-27 | 79 | 99 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-26 | 79 | 156 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-26 | 86 | 133 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-27 | 99 | 114 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-27 | 114 | 135 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDQWGSETRP DNLFRSSYGY DPPAVRCHTA AELVTTQSVE LVVRLFRSWS VVLFRVLGKM 60 DAEAARRKQV APPQEKRKRG RLELRRIQDR TSRQVRFSKR RSGLFKKAHE LSVLCDAEVA 120 MVVFSPAGRL YHYASLGTSI EKTFCRYWDL ANTDIDLNIE ARDSRDNYNT QVKHINS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 79 | 167 | 3 | 93 | MEF2C |
5f28_B | 4e-18 | 79 | 167 | 3 | 93 | MEF2C |
5f28_C | 4e-18 | 79 | 167 | 3 | 93 | MEF2C |
5f28_D | 4e-18 | 79 | 167 | 3 | 93 | MEF2C |
6byy_A | 5e-18 | 79 | 165 | 3 | 94 | MEF2 CHIMERA |
6byy_B | 5e-18 | 79 | 165 | 3 | 94 | MEF2 CHIMERA |
6byy_C | 5e-18 | 79 | 165 | 3 | 94 | MEF2 CHIMERA |
6byy_D | 5e-18 | 79 | 165 | 3 | 94 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G098986 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G098986_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943151 | 0.0 | EU943151.1 Zea mays clone 1571160 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001358011.1 | 2e-77 | uncharacterized protein LOC115072894 | ||||
TrEMBL | A0A1B6PIN3 | 7e-47 | A0A1B6PIN3_SORBI; Uncharacterized protein | ||||
STRING | Sb07g026180.1 | 6e-48 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 7e-23 | AGAMOUS-like 71 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G098986_P01 |