PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G098904_P01 | ||||||||
Common Name | pco121063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 34935.8 Da PI: 5.587 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.9 | 7.8e-17 | 148 | 199 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + + GRMZM2G098904_P01 148 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQ 199 68***************************************9995554...4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.8E-18 | 146 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.185 | 148 | 200 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-13 | 149 | 201 | No hit | No description |
Pfam | PF00170 | 3.2E-14 | 149 | 198 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 150 | 201 | No hit | No description |
CDD | cd14702 | 1.25E-22 | 151 | 201 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 153 | 168 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MKKCPSELEL EAFLRGREDA TAAAAAAVAE QKPTHDIAAL APFGAGGVFP SSDLSAFSFA 60 DSNTLNGTGN IHNHLWSHNH NVRHPAVSTT IESQSSICAA AAASPTSATN LYLKESQALG 120 GTSGSDSDSD SLLDIEGGPC EQSTNPQDVK RMRRMVSNRE SARRSRKRKQ AHLADLETQV 180 DQLRGENASL FKQLTDANQQ FTTAVTDNRI LKSDVEALRV KVKLAEDMVA RGALSCGLGS 240 LGLSPALNPR QACRGPDVLS VSGLDFPGAD DACFTGLSPA EQLQLQSSPL QSIAASLESL 300 DNRMASEVTS CGGPGVDVWP WDHHSNGGLS K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 168 | RRSRKRK |
2 | 162 | 169 | RRSRKRKQ |
3 | 164 | 169 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85148 | 0.0 | embryo| endosperm| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G098904 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G098904_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034689 | 0.0 | BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131334.1 | 0.0 | uncharacterized protein LOC100192650 | ||||
Swissprot | Q6ETX0 | 1e-135 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
TrEMBL | B4FC51 | 0.0 | B4FC51_MAIZE; Basic leucine zipper 9 | ||||
TrEMBL | K4JBQ8 | 0.0 | K4JBQ8_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G098904_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2095 | 37 | 96 | Representative plant | OGRP6956 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 5e-38 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G098904_P01 |
Entrez Gene | 100192650 |
Publications ? help Back to Top | |||
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