PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098800_P02
Common NameGRAS80, LOC100279263, ZEAMMB73_063421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 708aa    MW: 73942.1 Da    PI: 5.9545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098800_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.11.2e-813507073374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a ++g+   a+++Larl+++    g+p+ R a+y++eAL   la+      +   +  ts+ +++ +laa+k+fs+ sP+l+f+
  GRMZM2G098800_P02 350 DELAAAAKAAEAGNSIGAREILARLNHQLPLLGKPFLRSASYLKEALLLALAE-----GHHGGCHLTSPLDVALKLAAYKTFSDHSPVLQFT 436
                        7899*************************************************.....666677788888899******************* PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+ ++++++  +++H+iDfd++ G+QW+++lq+La R+    +  ps+++T+++s++s++  el+ t++++a+fA+ lg+pf+f++
  GRMZM2G098800_P02 437 NFTATQALIDEIARStsSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPSVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIPFQFSA 528
                        **********999887799************************977555589**************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   + +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+v+ +++ ad+ + +F ++fl++++ ++ l+dsl
  GRMZM2G098800_P02 529 I---SADTINPAELVSATaDEVVAVVLPVGCSARA---PP----LPAILRLVKQLAPKIVIAIDHGADRADLPFSQHFLNCFQSCMFLLDSL 610
                        9...789999999977777********99777665...44....556********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  + +++   k+E++l++++i+++v  +g+       +   Wr+++ +aGF pvp s+ a++qa++ll++v+++g++ve+    l+l+W+
  GRMZM2G098800_P02 611 DAA-GIDADSTCKIEKFLIQPRIEDAVLGRGKV-----DKPIAWRSAFAAAGFAPVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQ 696
                        888.78999********************9997.....78899************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                          +Lv+vSaWr
  GRMZM2G098800_P02 697 CGELVTVSAWR 707
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.232322687IPR005202Transcription factor GRAS
PfamPF035144.0E-79350707IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MRAALFGAER NGAADLVGDG KTLFWPEGKA KVLLEPRSVL DCTRSLSPNN STSTLSSSVG  60
GGAADSTGMA VASDSSAAAE ATKWGAPGEH GGGGKEDWAG GCELPPIPTG LDMGVGGGDS  120
WDAMLGNAAA AGQDQTFLNW IIGAAGDLDQ PGPPLPVHQQ PLLDNVGFGF PAADPLGFTL  180
DPHLCGLACD MSSPGAVSHT TNSSGGGNKA SSAFGLFSPE SASLQPPPPP VLFHEGIDTK  240
PPLLGAQLPG LLHQYQHQPT PGTTFFMPIP SFPDPNQRSP LIQPPPKRPQ SIGDDLYLAR  300
NRLLPPPAGQ GHAFPPLNGP SPFQLQPSPP LSHGAMKTTA AEAAQQQLLD ELAAAAKAAE  360
AGNSIGAREI LARLNHQLPL LGKPFLRSAS YLKEALLLAL AEGHHGGCHL TSPLDVALKL  420
AAYKTFSDHS PVLQFTNFTA TQALIDEIAR STSSCIHVID FDLGVGGQWA SFLQELAHRR  480
GAGGAALPSV KLTAFVSAAS HHPLELRLTR DNIAQFAADL GIPFQFSAIS ADTINPAELV  540
SATADEVVAV VLPVGCSARA PPLPAILRLV KQLAPKIVIA IDHGADRADL PFSQHFLNCF  600
QSCMFLLDSL DAAGIDADST CKIEKFLIQP RIEDAVLGRG KVDKPIAWRS AFAAAGFAPV  660
PPSNLAEAQA DCLLKRVQVR GFHVEKCGVG LTLYWQCGEL VTVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2242370780375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346750.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098800
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098800_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408238.10.0scarecrow-like protein 27
TrEMBLC0P5D50.0C0P5D5_MAIZE; GRAS transcription factor
STRINGGRMZM2G098800_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-76GRAS family protein