PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098800_P01
Common NameLOC100279263, ZEAMMB73_063421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 479aa    MW: 51399.2 Da    PI: 8.136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098800_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.73.8e-821204782374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L ++A+a ++g+   a+++Larl+++    g+p+ R a+y++eAL   la+      +   +  ts+ +++ +laa+k+fs+ sP+l+f
  GRMZM2G098800_P01 120 LDELAAAAKAAEAGNSIGAREILARLNHQLPLLGKPFLRSASYLKEALLLALAE-----GHHGGCHLTSPLDVALKLAAYKTFSDHSPVLQF 206
                        57899*************************************************.....666677788888899****************** PP

               GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                        +++ta qa+ ++++++  +++H+iDfd++ G+QW+++lq+La R+    +  ps+++T+++s++s++  el+ t++++a+fA+ lg+pf+f+
  GRMZM2G098800_P01 207 TNFTATQALIDEIARStsSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPSVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIPFQFS 298
                        ***********999887799************************977555589*************************************** PP

               GRAS 180 vlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        ++   + +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+v+ +++ ad+ + +F ++fl++++ ++ l+ds
  GRMZM2G098800_P01 299 AI---SADTINPAELVSATaDEVVAVVLPVGCSARA---PP----LPAILRLVKQLAPKIVIAIDHGADRADLPFSQHFLNCFQSCMFLLDS 380
                        *9...789999999977777********99777665...44....556******************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                        l+a  + +++   k+E++l++++i+++v  +g+       +   Wr+++ +aGF pvp s+ a++qa++ll++v+++g++ve+    l+l+W
  GRMZM2G098800_P01 381 LDAA-GIDADSTCKIEKFLIQPRIEDAVLGRGKV-----DKPIAWRSAFAAAGFAPVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYW 466
                        *888.78999********************9997.....78899************************************************ PP

               GRAS 363 kdrpLvsvSaWr 374
                        +  +Lv+vSaWr
  GRMZM2G098800_P01 467 QCGELVTVSAWR 478
                        ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.23293458IPR005202Transcription factor GRAS
PfamPF035141.3E-79120478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGSPRRARRR REGGLGWQLP GLLHQYQHQP TPGTTFFMPI PSFPDPNQRS PLIQPPPKRP  60
QSIGDDLYLA RNRLLPPPAG QGHAFPPLNG PSPFQLQPSP PLSHGAMKTT AAEAAQQQLL  120
DELAAAAKAA EAGNSIGARE ILARLNHQLP LLGKPFLRSA SYLKEALLLA LAEGHHGGCH  180
LTSPLDVALK LAAYKTFSDH SPVLQFTNFT ATQALIDEIA RSTSSCIHVI DFDLGVGGQW  240
ASFLQELAHR RGAGGAALPS VKLTAFVSAA SHHPLELRLT RDNIAQFAAD LGIPFQFSAI  300
SADTINPAEL VSATADEVVA VVLPVGCSAR APPLPAILRL VKQLAPKIVI AIDHGADRAD  360
LPFSQHFLNC FQSCMFLLDS LDAAGIDADS TCKIEKFLIQ PRIEDAVLGR GKVDKPIAWR  420
SAFAAAGFAP VPPSNLAEAQ ADCLLKRVQV RGFHVEKCGV GLTLYWQCGE LVTVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-2319447880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411RRARRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.836140.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098800
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098800_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539270.0BT053927.1 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408238.10.0scarecrow-like protein 27
TrEMBLB7ZX850.0B7ZX85_MAIZE; Uncharacterized protein
STRINGGRMZM2G098800_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-78GRAS family protein