PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098784_P01
Common NameLOC100381402, ZEAMMB73_674634
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 734aa    MW: 82407.3 Da    PI: 6.3035
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098784_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.32.2e-1193597301374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+    s+ l+a++lf  +sP+ +
  GRMZM2G098784_P01 359 LRTILIHCAQAVAADDRRTANELLKQIRHHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYRKLIAKRTT---ASDMLKAYHLFLAASPFKR 447
                        5789************************************************************999998...89***************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +sh++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L++R++gpp lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfe++  +
  GRMZM2G098784_P01 448 LSHFLSNQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAEKFKVPFEYQG-I 538
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+++e++++e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le++
  GRMZM2G098784_P01 539 ASKWESIRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETT 630
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pr++ +r+ +Ere++gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++++a   ++ ++ + + ++e++g+l++gWk+r 
  GRMZM2G098784_P01 631 VPRDDAQRALIEREMFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAMDKVKDIYHKDFVIDEDNGWLLQGWKGRI 722
                        ***********************************************************************888****************** PP

               GRAS 367 LvsvSaWr 374
                        L+++S W+
  GRMZM2G098784_P01 723 LYAISTWK 730
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.903333710IPR005202Transcription factor GRAS
PfamPF035147.7E-117359730IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGLDNTYGEL SGMFYGGLSY DGYADHSSAS DYFRFADPLP AVVPQMAAEA CSNPSSTVSR  60
ANTEADNPED WEFISDESLN YISRMLMEED IDEKVSMYQA ESAALRAAAK PFYDILGHKF  120
PPSPDRQVMP WPMDSPSESS GSICTQSVAS AVTSSSVGGT VDSNRCYDVG HSEQLEAFRG  180
LCGQSSHPLV GASSDASNAV GELEDILITN GGIPEYLFES LPTWDFRRGI EEAQKSLPVS  240
DKLVIDLETG GIARPQEARK DVPMNAKKDD VLKAKKNRQS EDLDLMEGRN IKQSAFCSDE  300
PGWIEMFDDL LRQTEKKATV LRELMRSEAS KNSQVTQMKG PSGPRPRGRK PTKNDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRHHSK PNGDGTQRLA HCFADGLEAR LAGTGSQLYR  420
KLIAKRTTAS DMLKAYHLFL AASPFKRLSH FLSNQTILSL TKNASKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAEKFK VPFEYQGIAS  540
KWESIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IEREMFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAMDKVKDI YHKDFVIDED NGWLLQGWKG  720
RILYAISTWK PKNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4936573324381Protein SCARECROW
5b3h_D1e-4936573324381Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.371550.0ear| embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098784
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098784_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611760.0BT061176.1 Zea mays full-length cDNA clone ZM_BFb0119A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167714.10.0uncharacterized protein LOC100381402
TrEMBLA0A1D6PDQ10.0A0A1D6PDQ1_MAIZE; Uncharacterized protein
STRINGGRMZM2G098784_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein