PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098696_P01
Common NameZEAMMB73_676522, Zm.86083
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 370aa    MW: 39562 Da    PI: 6.2474
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098696_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35371282102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+l
  GRMZM2G098696_P01  37 FLSKTYQLVDDPAVDDIISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRL 119
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GRMZM2G098696_P01 120 LCDIHRRKV 128
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3828121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.26E-3534126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAAEHATAAV GEPPPATSQP AEGVTAAAGQ RSVPTPFLSK TYQLVDDPAV DDIISWNDDG  60
SAFIVWRPAE FARDLLPKYF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRLL  120
CDIHRRKVSP ATGAVTVAAA AAAIPMALPV GSPVYSGEEQ VLSSSSPEPP SLQQHPPAPS  180
GSGSGGVVSG DVGEENERLR RENARLAREL GQMKKLCNNI LLLMSKYAAT QQPDAAKEAA  240
AGNCTGESSD AAAAPPLPSI LELLPSCRAD PAPAAAGTDH EDDEKAGARL FGVSIGRKRM  300
RDESDHHAGV CAAEVKAEPV DARPDQQRQR NATEPQSWPI YRPRPVYHPL RACNGSGSAG  360
SDHDGSNDSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262612619129Heat shock factor protein 1
5d5v_B2e-262612619129Heat shock factor protein 1
5d5v_D2e-262612619129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860830.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098696
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098696_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677301.10.0heat shock factor protein 7 isoform X2
SwissprotQ6Z9C81e-147HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLB6TJ680.0B6TJ68_MAIZE; Heat shock factor protein 7
STRINGGRMZM2G098696_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]