PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098594_P06
Common NameZm.83192
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 382aa    MW: 40814.3 Da    PI: 9.3641
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098594_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-24101145145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GRMZM2G098594_P06 101 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 145
                        79****************************************986 PP
2QLQ61.81.9e-213064236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++
  GRMZM2G098594_P06 30 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 64
                       5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-112965IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.073065IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.3E-163164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.346101145IPR014977WRC domain
PfamPF088794.5E-21102144IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLSSASSAAG AAMGMGGGGY AHQPPPQRTV FTAAQWAELE QQALIYKYLM AGVPVPPDLL  60
LPVRPGPAAA FSFAGPAAAS PFYHQHHPSL SYYAYYGKKL DPEPWRCRRT DGKKWRCSKE  120
AHPDSKYCER HMHRGRNRSR KPVESKTASS SSPAHPSPPQ LSTVTTTAPL EPLAAAGGKV  180
HGLSLGGGAA GSSHLGVDAS NAHYRYGSNR YPLGAKPDGG ELSFFSGASS GNNSRGGFTI  240
DSPSDNNSWH SALASSVPPF TLSTKSGDSG LLPGAYASYS QSHSHMEPPR ELGQVTIASL  300
AQEQERQQPF SGGMLGNVKQ ENQNQPLRPF FDEWPGTRAD SWPPEMDGAP RAGRTSFSSS  360
TTQLSISIPM PRCELHLRNQ NS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.960280.0cell lignification| embryo| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098594
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098594_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158530.0EF515853.1 Zea mays putative growth-regulating factor 14 (GRF14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106045.10.0putative growth-regulating factor 14
SwissprotQ6AWY41e-147GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA5HEH30.0A5HEH3_MAIZE; Putative growth-regulating factor 14
STRINGGRMZM2G098594_P060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-22growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]