PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098594_P02
Common Namecl52038_1, GRF7, Zm.83192
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 373aa    MW: 39695.1 Da    PI: 9.1957
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098594_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24101145145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GRMZM2G098594_P02 101 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 145
                        79****************************************986 PP
2QLQ61.81.8e-213064236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++
  GRMZM2G098594_P02 30 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 64
                       5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-112965IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.073065IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-163164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.346101145IPR014977WRC domain
PfamPF088794.4E-21102144IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLSSASSAAG AAMGMGGGGY AHQPPPQRTV FTAAQWAELE QQALIYKYLM AGVPVPPDLL  60
LPVRPGPAAA FSFAGPAAAS PFYHQHHPSL SYYAYYGKKL DPEPWRCRRT DGKKWRCSKE  120
AHPDSKYCER HMHRGRNRSR KPVESKTASS SSPAHPSPPQ LSTVTTTAPL EPLAAAGGKV  180
HGLSLGGGAA GSSHLGVDAS NAHYRYGSKY PLGAKPDGGE LSFFSGASSG NNSRGGFTID  240
SPSDNNSWHS ALASSVPPFT LSTKSGDSGL LPGAYASYSQ SHSHMEPPRE LGQVTIASLA  300
QEQERQQPFS GGMLGNVKQE NQNQPLRPFF DEWPGTRADS WPPEMDGAPR AGRTSFSSST  360
TQLSISIPMP RCD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.960280.0cell lignification| embryo| meristem| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098594
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098594_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0610730.0BT061073.1 Zea mays full-length cDNA clone ZM_BFb0094H04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647265.10.0putative growth-regulating factor 14 isoform X2
SwissprotQ6AWY41e-150GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLC0HFG70.0C0HFG7_MAIZE; GRF transcription factor
STRINGGRMZM2G098594_P060.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-22growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]