PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098557_P01
Common NameLOC103654505, ZEAMMB73_575738, Zm.13184
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 1112aa    MW: 121807 Da    PI: 7.6214
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098557_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.51.1e-39169246178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adl+ ak+yhrrhkvCe+hsk+  ++v+++ qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  GRMZM2G098557_P01 169 MCQVDECRADLTGAKDYHRRHKVCETHSKTIRAVVANQAQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 246
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33163231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.505167244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-36168247IPR004333Transcription factor, SBP-box
PfamPF031102.5E-29170243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MQREVGPQVA PPLFIHHQIQ PMPPHAAAAV KKRGQPCPAA AAAPAEAAAG NWNPRLWDWD  60
SRALTARPSA DALRLAGGQP QPQPQQAAEV HRQGAGGSGA LKLQLGPREG STAPTDASPT  120
APAASLSPSP PASGQDLVVR PSKRVRSGSP GSAGGGGGGA ANGGAGYPMC QVDECRADLT  180
GAKDYHRRHK VCETHSKTIR AVVANQAQRF CQQCSRFHPL AEFDEGKRSC RRRLAGHNRR  240
RRKTQPADVS SQLLLPGNQE NAANRTQDIV NLITVIAHLH GSSVGKVPSI PPIPDKQNLV  300
EIISKINSFN NMTSADKSPP SEVVDLDALQ EQQVQRQDSV GKTTNGIDKQ TVPSTMDLLG  360
VFPTGLATST PETNTSQSQG SSDSSGNNKS KSHSTEPVTV VNSHDKSTRD FSAAGFMRSN  420
STHESQPHIY KQTEQETRPY LSLQLFGSTE EDFPPKMDSV NKYLSSESSN PLDERSPSSS  480
PPITRKFFPI HSVDEEVRHP HITDYGEDAT MGEVSTNQAW LAPPLDLFKD SERPIENGSP  540
PNPGYQSCYA STSCSDHSPS TSNSDGQDRT GRIIFKLFGK EPSTIPGNLR DDIVNWLKHS  600
PTEMEGYIRP GCLVLSMYLL MPGIAWDELE ENLLQRVNSL VQSSDLDFWR KGRFLVRTNS  660
QLVSYKAGMT RLSKSWRTWN TPELTLVSPI AVVGGQKTSL ILKGRNLSIP GTQIHCTSIG  720
KYISKEVLCS AYPGTIYDDS GVETFDLPGQ PDLILGRCFV EVENRFRGNS FPVIVASSSV  780
CQELRNLEVE FEDSQVLDVS SDGQIHDSRQ PKTSVQVLHF LNELGWLFQR ASACTSSTRS  840
DVSDLDLIRF STARFRYLLL FCSERDWCSL TKTLLDILAK RSLASEELSK ETMEMLAEIH  900
LLNRAVKRKS RNMVHLLVKF VVICPDNSKV YPFLPNLPGP GGLTPLHLAA SIENAEDIVD  960
ALTDDPQQTG VTCWQTVLDD DGQSPETYAK LRNHNSYNEL VAQKLVDMKN NQVTVRVNGD  1020
GIRADRLGND VGDRKRSGVQ ALQIRSCSQC AILESGVLMQ PVRSRGFLAR PYIHSMLAIA  1080
AVCVCVCVFM RALLRINSGK SFKWERLDYG TI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32160243184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.131840.0embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098557
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098557_P01
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349185.10.0SBP-transcription factor 7
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLK7UCC70.0K7UCC7_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G098557_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14