PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098517_P02
Common NameLOC100384069
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 558aa    MW: 60991.6 Da    PI: 6.037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098517_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4324.6e-1321885571373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+elL++cA+av++++   ++ ++ +l++++s +g+p++Rl ay++e+L arla s+s++ykal+++e +   ss+ l+++++++e++P++k
  GRMZM2G098517_P02 188 LKELLIACARAVEQNNGYSIDLMVPELRKMVSVSGEPLERLGAYMVEGLVARLAASGSSIYKALRCKEPR---SSDLLSYMHFLYEACPYFK 276
                        5799*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +R+Tg+++p s   +   le +g+rL+++A   +vpf+f++ v
  GRMZM2G098517_P02 277 FGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWVSLLQALAARPGGPPFVRVTGIDDPVSAyaRGGGLELVGKRLSHIAGLYKVPFQFDA-V 367
                        **********************************************************99999999************************.6 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a + +++e  +L v pgEa+aVn+ l+lh+++de+vs++++rd+vL+lvk+lsP+v+++veqe+++n+++F++rf+e+l+yy+a+f+s++  
  GRMZM2G098517_P02 368 AISGSEVEEGHLGVVPGEAVAVNFTLELHHIPDETVSTANHRDRVLRLVKGLSPRVLTLVEQESNTNTAPFAQRFAETLDYYAAIFESIDLA 459
                        8899**************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpr ++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls  +++++k+ll+ ++ d y++ e++g l+lgWk+rp
  GRMZM2G098517_P02 460 LPRGDRERINIEQHCLAREIVNLVACEGEERVERHEVFGKWKARLMMAGFRPSPLSALVNATIKTLLQSYSPD-YKLAEREGVLYLGWKNRP 550
                        ***********************************************************************66.****************** PP

               GRAS 367 LvsvSaW 373
                        L++ SaW
  GRMZM2G098517_P02 551 LIVSSAW 557
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.027162539IPR005202Transcription factor GRAS
PfamPF035141.6E-129188557IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MADPPTSRMV QHPFGDIPSQ TPKQFLYSGS SQHLCHPYQS ASDAHVAPQR HYTVRSQSQS  60
QSPDAGSEDF ETHSRQYTLD SSSASGCSGH GSPSCQSVHA GSRSPVSHSH DDSHSGSTNG  120
NGSPASASCV TEDPTDLKQK LKDLEAVMLG TDTDPETVDS LEIAIADRLS VEPEEWKNNM  180
VSVPRGDLKE LLIACARAVE QNNGYSIDLM VPELRKMVSV SGEPLERLGA YMVEGLVARL  240
AASGSSIYKA LRCKEPRSSD LLSYMHFLYE ACPYFKFGYM SANGAIAEAV KGEDRIHIID  300
FHIAQGAQWV SLLQALAARP GGPPFVRVTG IDDPVSAYAR GGGLELVGKR LSHIAGLYKV  360
PFQFDAVAIS GSEVEEGHLG VVPGEAVAVN FTLELHHIPD ETVSTANHRD RVLRLVKGLS  420
PRVLTLVEQE SNTNTAPFAQ RFAETLDYYA AIFESIDLAL PRGDRERINI EQHCLAREIV  480
NLVACEGEER VERHEVFGKW KARLMMAGFR PSPLSALVNA TIKTLLQSYS PDYKLAEREG  540
VLYLGWKNRP LIVSSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-661925588375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.186800.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098517
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098517_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690730.0BT069073.1 Zea mays full-length cDNA clone ZM_BFb0161L09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170141.10.0uncharacterized protein LOC100384069
RefseqXP_008651758.10.0uncharacterized protein LOC100384069 isoform X1
RefseqXP_020396255.10.0uncharacterized protein LOC100384069 isoform X1
RefseqXP_020396257.10.0uncharacterized protein LOC100384069 isoform X1
RefseqXP_020396258.10.0uncharacterized protein LOC100384069 isoform X1
RefseqXP_020396259.10.0uncharacterized protein LOC100384069 isoform X1
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLC0PLA40.0C0PLA4_MAIZE; Uncharacterized protein
TrEMBLK0DF340.0K0DF34_MAIZE; GRAS38 transcription factor (Fragment)
STRINGGRMZM2G098517_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]