PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G098517_P01 | ||||||||
Common Name | LOC100384069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 60991.6 Da PI: 6.037 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 432 | 4.6e-132 | 188 | 557 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l+elL++cA+av++++ ++ ++ +l++++s +g+p++Rl ay++e+L arla s+s++ykal+++e + ss+ l+++++++e++P++k GRMZM2G098517_P01 188 LKELLIACARAVEQNNGYSIDLMVPELRKMVSVSGEPLERLGAYMVEGLVARLAASGSSIYKALRCKEPR---SSDLLSYMHFLYEACPYFK 276 5799*****************************************************************9...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 f+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +R+Tg+++p s + le +g+rL+++A +vpf+f++ v GRMZM2G098517_P01 277 FGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWVSLLQALAARPGGPPFVRVTGIDDPVSAyaRGGGLELVGKRLSHIAGLYKVPFQFDA-V 367 **********************************************************99999999************************.6 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 a + +++e +L v pgEa+aVn+ l+lh+++de+vs++++rd+vL+lvk+lsP+v+++veqe+++n+++F++rf+e+l+yy+a+f+s++ GRMZM2G098517_P01 368 AISGSEVEEGHLGVVPGEAVAVNFTLELHHIPDETVSTANHRDRVLRLVKGLSPRVLTLVEQESNTNTAPFAQRFAETLDYYAAIFESIDLA 459 8899**************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 lpr ++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls +++++k+ll+ ++ d y++ e++g l+lgWk+rp GRMZM2G098517_P01 460 LPRGDRERINIEQHCLAREIVNLVACEGEERVERHEVFGKWKARLMMAGFRPSPLSALVNATIKTLLQSYSPD-YKLAEREGVLYLGWKNRP 550 ***********************************************************************66.****************** PP GRAS 367 LvsvSaW 373 L++ SaW GRMZM2G098517_P01 551 LIVSSAW 557 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.027 | 162 | 539 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-129 | 188 | 557 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MADPPTSRMV QHPFGDIPSQ TPKQFLYSGS SQHLCHPYQS ASDAHVAPQR HYTVRSQSQS 60 QSPDAGSEDF ETHSRQYTLD SSSASGCSGH GSPSCQSVHA GSRSPVSHSH DDSHSGSTNG 120 NGSPASASCV TEDPTDLKQK LKDLEAVMLG TDTDPETVDS LEIAIADRLS VEPEEWKNNM 180 VSVPRGDLKE LLIACARAVE QNNGYSIDLM VPELRKMVSV SGEPLERLGA YMVEGLVARL 240 AASGSSIYKA LRCKEPRSSD LLSYMHFLYE ACPYFKFGYM SANGAIAEAV KGEDRIHIID 300 FHIAQGAQWV SLLQALAARP GGPPFVRVTG IDDPVSAYAR GGGLELVGKR LSHIAGLYKV 360 PFQFDAVAIS GSEVEEGHLG VVPGEAVAVN FTLELHHIPD ETVSTANHRD RVLRLVKGLS 420 PRVLTLVEQE SNTNTAPFAQ RFAETLDYYA AIFESIDLAL PRGDRERINI EQHCLAREIV 480 NLVACEGEER VERHEVFGKW KARLMMAGFR PSPLSALVNA TIKTLLQSYS PDYKLAEREG 540 VLYLGWKNRP LIVSSAWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-66 | 192 | 558 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18680 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G098517 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G098517_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069073 | 0.0 | BT069073.1 Zea mays full-length cDNA clone ZM_BFb0161L09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170141.1 | 0.0 | uncharacterized protein LOC100384069 | ||||
Refseq | XP_008651758.1 | 0.0 | uncharacterized protein LOC100384069 isoform X1 | ||||
Refseq | XP_020396255.1 | 0.0 | uncharacterized protein LOC100384069 isoform X1 | ||||
Refseq | XP_020396257.1 | 0.0 | uncharacterized protein LOC100384069 isoform X1 | ||||
Refseq | XP_020396258.1 | 0.0 | uncharacterized protein LOC100384069 isoform X1 | ||||
Refseq | XP_020396259.1 | 0.0 | uncharacterized protein LOC100384069 isoform X1 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | C0PLA4 | 0.0 | C0PLA4_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DF34 | 0.0 | K0DF34_MAIZE; GRAS38 transcription factor (Fragment) | ||||
STRING | GRMZM2G098517_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 | Representative plant | OGRP1409 | 14 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G098517_P01 |
Entrez Gene | 100384069 |
Publications ? help Back to Top | |||
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