PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G098443_P01 | ||||||||
Common Name | ZEAMMB73_752087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29337 Da PI: 9.8019 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.7 | 1.5e-30 | 40 | 128 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + GRMZM2G098443_P01 40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRG 128 89***************************955556888************************************************843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-41 | 30 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.03E-28 | 37 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-26 | 38 | 125 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 40 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-27 | 40 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-18 | 40 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEFTTPPPAT RSGGGEERAA AEHNQHHQQQ HATVEKEHMF DKVVTPSDVG KLNRLVIPKQ 60 HAEKYFPLDA AANEKGLLLS FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG 120 DTVSFGRGIS EAARDRLFID WRCRPDPPVV HHQYHHRLPL PSAVVPYAPW AAHAHHHHYP 180 ADGHTEPVTP CLCATLVATE MRASSSQLSL TRSNLSRPPQ PRIARVDGAQ PRPSSSPRQP 240 QSLWCRSCQP QPRRTADVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-63 | 35 | 145 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-63 | 35 | 145 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G098443 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G098443_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727001 | 0.0 | KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657605.1 | 1e-139 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 8e-82 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | K7UV27 | 0.0 | K7UV27_MAIZE; B3 domain-containing transcription factor NGA2 | ||||
STRING | GRMZM2G098443_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-63 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G098443_P01 |
Publications ? help Back to Top | |||
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