PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G098063_P01 | ||||||||
Common Name | LOC103643729, Zm.128810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 324aa MW: 36867 Da PI: 8.6599 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.7e-19 | 36 | 114 | 12 | 95 |
HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + rl +p kf++++ g+++ + +tle++ grs+ v++ + g++vl++GWkeFv a+gL gD++vFk+dg+ + +v GRMZM2G098063_P01 36 FRERLAVPDKFMQHFtrGLVT-S--SVTLESRCGRSFHVQV--AENLGKVVLQAGWKEFVAAHGLSMGDVLVFKHDGTPRL--KVF 114 4568********666988884.3..5***************..*******************************8774333..444 PP | |||||||
2 | B3 | 49.5 | 7.8e-16 | 238 | 323 | 12 | 99 |
HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + +++ +p+ +a+ + e++tltl+ + g+sWev+++++k++++ l++GW++F+++n+L+ gD ++F+l ++ s+ ++ v+v+r+ GRMZM2G098063_P01 238 S-QNMAIPRAYADVYlpF----EDRTLTLQ-RCGESWEVQCRIQKGRRGcKRLAQGWRQFAHDNKLQLGDLCLFELLENtSKYTMDVHVVRA 323 3.4599******888532....45588866.59********99777777789***********************99888999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 22 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-20 | 24 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.774 | 25 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.15E-20 | 26 | 117 | No hit | No description |
Pfam | PF02362 | 6.1E-16 | 28 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.7E-9 | 28 | 119 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-19 | 219 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 220 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-8 | 224 | 324 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 226 | 324 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-16 | 228 | 319 | No hit | No description |
Pfam | PF02362 | 3.8E-14 | 237 | 323 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MMKPGERSRE RDADFHYSGH DDEKDRYFFK VLVGDFRERL AVPDKFMQHF TRGLVTSSVT 60 LESRCGRSFH VQVAENLGKV VLQAGWKEFV AAHGLSMGDV LVFKHDGTPR LKVFMFDHSC 120 CEKVPPPCPV KIKREHHVCG GERRETHPEV PSSSCGDASM TFVTASSSSA SPSDDASGEW 180 ILSPEDQKPR YVPGYILPNG TYLTCVQMQK LKERVRARTS TIPIYGCTVR KSNIRRGSQN 240 MAIPRAYADV YLPFEDRTLT LQRCGESWEV QCRIQKGRRG CKRLAQGWRQ FAHDNKLQLG 300 DLCLFELLEN TSKYTMDVHV VRAE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.128810 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G098063 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G098063_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU972562 | 0.0 | EU972562.1 Zea mays clone 383525 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665123.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A1D6KXP0 | 0.0 | A0A1D6KXP0_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G098063_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 | Representative plant | OGRP5872 | 4 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G098063_P01 |
Entrez Gene | 103643729 |