PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G097788_P01 | ||||||||
Common Name | LOC103633664, Zm.1454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9512.05 Da PI: 5.0643 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 2 | 48 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W++ E ++ +a + + + +W+++a+ +g g+t+++ + ++ + GRMZM2G097788_P01 2 SWSQSENARFERALATYDRDtprRWELVAAAVGGGKTAEDARRHYAD 48 7*****************99************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.435 | 1 | 50 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 4.2E-6 | 1 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.1E-10 | 2 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSWSQSENAR FERALATYDR DTPRRWELVA AAVGGGKTAE DARRHYADLV DDVGDIESGG 60 YGANDQNANG GANGSNGNNR GGRANRPQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-16 | 3 | 71 | 11 | 78 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1454 | 1e-152 | silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G097788 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G097788_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968089 | 2e-63 | EU968089.1 Zea mays clone 314034 MYB-like transcription factor DIVARICATA mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339187.1 | 5e-58 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-20 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A1D6JWA5 | 1e-56 | A0A1D6JWA5_MAIZE; RAD-like 3 | ||||
TrEMBL | A0A317YDK9 | 1e-56 | A0A317YDK9_MAIZE; Protein RADIALIS-like 3 | ||||
STRING | GRMZM2G097788_P01 | 2e-57 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-18 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G097788_P01 |
Entrez Gene | 103633664 |