PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G097638_P01 | ||||||||
Common Name | LOC103642011, ZEAMMB73_765153, Zm.92943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 37290.9 Da PI: 4.8511 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl GRMZM2G097638_P01 16 KGSWTPEEDMRLIAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.1e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l GRMZM2G097638_P01 69 RGNFTAEEEEAIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.195 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.85E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.97 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEEAI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP 120 AGEERGAAGS KKKKKKKTTK AAAGGGAEAP LPLPSPSPSS STTTTNFSSG DSGEQQSNNM 180 SKEADDELDL ENFEMMPMLD VDDPSFGFGT LVDTAPAPYG SAVSVSVSAA TSPCASSTSP 240 PPASAPPGVD DLLVLPEIDI GHELWSIIDG DAAEAPAPCC QRNPAEPTNG ADAASHGAEG 300 KEWWLEDLER ELGLWGTVED YQYPMGPQGL LVADHPDPIP AMVDDPVSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 136 | KKRVSPAGEERGAAGSKKKKKKK |
2 | 130 | 136 | KKKKKKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G097638 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G097638_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070145 | 0.0 | BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663545.1 | 0.0 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-101 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A3L6G6K3 | 0.0 | A0A3L6G6K3_MAIZE; Myb-related protein Zm1 | ||||
STRING | GRMZM2G097638_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-68 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G097638_P01 |
Entrez Gene | 103642011 |
Publications ? help Back to Top | |||
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