PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G097456_P01 | ||||||||
Common Name | GRAS11, Zm.127428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 456aa MW: 49478.5 Da PI: 5.398 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 304.2 | 3.1e-93 | 63 | 453 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsP 89 ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r ++ + +a+++ +s ++++++a++l f++++P GRMZM2G097456_P01 63 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTP 154 79***************************************************943444555555444444444777777777789****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177 +++f++ +aN aIleaveg +vH++ ++ ++++Q p+L++ LasRpegpp lR+T+ + + ++ee+g +L++fA++ +++++ GRMZM2G097456_P01 155 WHRFGYTAANAAILEAVEGFPAVHVVELGTTHCMQIPTLIDMLASRPEGPPILRLTVADVAPCApppaLDMSYEELGAKLTNFARSRNMSMD 246 ********************************************************99885555777778899******************* PP GRAS 178 fnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFler 256 f+v+ ++ +++l++++L ++ Eal+ n+++ lh+++de++ + s r+ +Lk +++l P++vvvve++ad ++ + + r GRMZM2G097456_P01 247 FRVVpttpadaFTSLVDQLRVQQLVMDGTEALVLNFHMLLHTVPDETAGSVSlthpvsLRTMLLKSLRTLDPNLVVVVEEDADFTADDVVGR 338 ****998777666678888999999999****************999877766667777999****************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 + a+++ + +d++++ lp+ se+r+++E+e +g++++nv+a+eg +r+er+e ++W +r+++aGF++v+++e+aa ++k++l++++ g GRMZM2G097456_P01 339 LRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-IGWKVENVLAQEGVDRVERQEDRGRWGQRMRSAGFRAVSFGEEAAGEVKAMLNEHA-AG 428 ********************************.********************************************************.88 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373 + ++ e++ lvl+Wk++++v++SaW GRMZM2G097456_P01 429 WGMKREDDDLVLTWKGHNVVFASAW 453 9999********************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.027 | 36 | 435 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-90 | 63 | 453 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MMQFTHTAPP PPPLHPNGHA GGLGLGLFLD VGAPRAARPW PGSFPTPASK ISLGNLNSTS 60 CMEQLLVHCA NAIEANDATL TQQILWVLNN IAPPDGDSNQ RLTAAFLCAL VARASRTGAC 120 KAVTAAVAAA VESAALHVHR FTAVELASFV DLTPWHRFGY TAANAAILEA VEGFPAVHVV 180 ELGTTHCMQI PTLIDMLASR PEGPPILRLT VADVAPCAPP PALDMSYEEL GAKLTNFARS 240 RNMSMDFRVV PTTPADAFTS LVDQLRVQQL VMDGTEALVL NFHMLLHTVP DETAGSVSLT 300 HPVSLRTMLL KSLRTLDPNL VVVVEEDADF TADDVVGRLR AAFNFLWIPY DAVDTFLPKG 360 SEQRRWYEAE IGWKVENVLA QEGVDRVERQ EDRGRWGQRM RSAGFRAVSF GEEAAGEVKA 420 MLNEHAAGWG MKREDDDLVL TWKGHNVVFA SAWAPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-53 | 41 | 456 | 66 | 475 | Protein SHORT-ROOT |
5b3h_B | 4e-54 | 41 | 456 | 12 | 421 | Protein SHORT-ROOT |
5b3h_E | 4e-54 | 41 | 456 | 12 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G097456 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G097456_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067693 | 0.0 | BT067693.1 Zea mays full-length cDNA clone ZM_BFc0127K06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148176.2 | 0.0 | GRAS family transcription factor containing protein | ||||
Swissprot | Q9SN22 | 1e-162 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | C0PHC4 | 0.0 | C0PHC4_MAIZE; GRAS transcription factor | ||||
STRING | GRMZM2G097456_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 | Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-159 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G097456_P01 |