PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G097275_P04
Common NameLOC100279234
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 443aa    MW: 46982.4 Da    PI: 9.3473
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G097275_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41170246278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        CqvegC++dls+akeyhr+h+vCe hskap+v+v+gle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  GRMZM2G097275_P04 170 CQVEGCKVDLSSAKEYHRKHRVCEPHSKAPKVVVAGLERRFCQQCSRFHGLAEFDQKKKSCRRRLNDHNARRRKPQP 246
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-33165231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.154167244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-39169249IPR004333Transcription factor, SBP-box
PfamPF031108.0E-32170243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGSFGMDWNQ KASVLWDWEN LPPVAVGASG SENPRMAAAP QALHSACGTI SSSSEMGYGS  60
SKSSVSASAD DSSPKAKGKS MELNFAPDKV PDKNTDSGKV DDARTSPSSP VIAISSAEPV  120
LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV TPPPASPKKT KVTPNKKSYC QVEGCKVDLS  180
SAKEYHRKHR VCEPHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQKKKSC RRRLNDHNAR  240
RRKPQPEALS FGSSRLSAMF YETKGPWLRA GGVDGLHQPS QQVWNNFMPH GVHQDFDGFT  300
AFKGTNAKVL HQGVEASAVA SNQNGAPQPD LHRALSLLSN SWAGGGTGTG TDQHPTAQLR  360
HAALSSSLAA SSVSVAQASP AGLWQDGGAA LGHHDYAHAF QAINTPGGGG AAAPIAVGQE  420
LLQLPRPPSL YDDGSSSRYD LMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271702431184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225242KKKSCRRRLNDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.47030.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G097275
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G097275_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0395210.0BT039521.1 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds.
GenBankBT0399450.0BT039945.1 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds.
GenBankBT0538640.0BT053864.1 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008643440.10.0squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1
RefseqXP_020408856.10.0squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2
SwissprotA2X0Q61e-127SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-127SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A1D6H0A10.0A0A1D6H0A1_MAIZE; Squamosa promoter-binding-like protein 2
STRINGGRMZM2G097275_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-39squamosa promoter binding protein-like 2