PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G097182_P01 | ||||||||
Common Name | EREB141, LOC103650692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26300.4 Da PI: 6.7824 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9.2e-15 | 43 | 95 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + rWv+e+r+p + +r++lg++ t+e+Aa+a++ a+ +l+g+ GRMZM2G097182_P01 43 PVYRGVRARAGGTRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGA 95 68*****9999889****9999.....446*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-11 | 43 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.943 | 44 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-26 | 44 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-24 | 44 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-16 | 44 | 105 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.28E-21 | 45 | 105 | No hit | No description |
PRINTS | PR00367 | 1.1E-5 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDADDSSYAS SSSFSPPPSP ADHLRLPPKR RAGRKKFRET RHPVYRGVRA RAGGTRWVCE 60 VREPQAQARI WLGTYPTPEM AARAHDVAAI ALRGATAADL NFPDSAHALP RARTAAPDDI 120 RRAAAQAAEL YRPSPSSSSA SGLLLHHGRR TIAAPPPPLS LPPPEASSTC CWTTSTGTRG 180 AGTTPTCCDG FLDEDSIFDM PGLIHDMAWG MLLTPPAMGR GLDWGALDDD DDHSHVDCTL 240 WTLDG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G097182 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G097182_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727671 | 0.0 | KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674480.1 | 1e-175 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 3e-76 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-76 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A060D109 | 1e-174 | A0A060D109_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
TrEMBL | A0A3L6FH28 | 1e-174 | A0A3L6FH28_MAIZE; Dehydration-responsive element-binding protein 1F | ||||
STRING | GRMZM2G097182_P01 | 1e-175 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 6e-43 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G097182_P01 |
Entrez Gene | 103650692 |
Publications ? help Back to Top | |||
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