PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096709_P01
Common NameGRF10, GRF3, Zm.83885
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 269aa    MW: 28540.8 Da    PI: 4.8828
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096709_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC711.4e-22179217139
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 
                        ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r 
  GRMZM2G096709_P01 179 EPEPGRCRRTDGKKWRCWRNTIPNEKYCERHMHRGRKRP 217
                        69***********************************96 PP
2QLQ53.28.9e-19113148237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++++k
  GRMZM2G096709_P01 113 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPVWK 148
                        8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-7112148IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-11113147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.524113148IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.179179223IPR014977WRC domain
PfamPF088796.3E-19180217IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTAEGEAKNP SAGGGGDNPQ HQQAAPAPAP AQGEVAQEAA VQGTGQEQER DKADREVQGG  60
AGEKDDGACR DLVLVEDPEV LAVEDPEEAA ATAALQEEMK ALVASIPDGA GAAFTAMQLQ  120
ELEQQSRVYQ YMAARVPVPT HLVFPVWKSV TGASSEGAQK YPTLMGLATL CLDFGKNPEP  180
EPGRCRRTDG KKWRCWRNTI PNEKYCERHM HRGRKRPVQV FLEDDEPDSA SGSKPAAPGK  240
ATEGAKKADD KSPSSKKLAV AAPAAVQST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.838850.0ear| embryo| meristem| ovary| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096709
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Function -- GeneRIF ? help Back to Top
  1. ZmGRF10 aids in fine-tuning the homeostasis of the GRF-GIF complex in the regulation of cell proliferation.
    [PMID: 24854713]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096709_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425130.0BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBankBT0874370.0BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBankEF5158490.0EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBankEU9606010.0EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106028.10.0GRF-interacting factor 10
SwissprotA5HEG90.0GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A3L6E3610.0A0A3L6E361_MAIZE; Growth-regulating factor 11
STRINGGRMZM2G096709_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Representative plantOGRP1193646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-30growth-regulating factor 5
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  3. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  4. Wu L, et al.
    Overexpression of the maize GRF10, an endogenous truncated growth-regulating factor protein, leads to reduction in leaf size and plant height.
    J Integr Plant Biol, 2014. 56(11): p. 1053-63
    [PMID:24854713]
  5. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]