PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096358_P01
Common NameLOC100273260, ZEAMMB73_741722
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 362aa    MW: 39223.7 Da    PI: 6.4448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096358_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-173077148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GRMZM2G096358_P01 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 77
                       89********************************************97 PP
2Myb_DNA-binding53.65.3e-1783126146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G096358_P01  83 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 126
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5112577IPR017930Myb domain
SuperFamilySSF466897.49E-3127124IPR009057Homeodomain-like
SMARTSM007171.2E-132979IPR001005SANT/Myb domain
PfamPF002496.2E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-233184IPR009057Homeodomain-like
CDDcd001673.07E-113277No hitNo description
PROSITE profilePS5129426.28178132IPR017930Myb domain
SMARTSM007171.5E-1582130IPR001005SANT/Myb domain
PfamPF002497.1E-1683126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2485131IPR009057Homeodomain-like
CDDcd001678.59E-1387126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSQRKGAMAA AVTASKHRED QEAMMVELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTPEE QLLILELHSK WGNRWSRIAQ HLPGRTDNEI  120
KNYWRTRVQK QARQLRVDAN SAVFRDAVRC YWMPRLLEKM AAHHHGDGEL PPPLHPSHNI  180
AGTASSRSPP AHGSQQEDPS SSAPAASGHY LQQVDPSPST STTSGSTTSA ALPPVPCFSE  240
SELRWVVDQY GAAYGYTDDL DLDGGAGVVD DDSAAAAALD SLGLDGLDLG PADGGVYSDA  300
TLLDYLNATC AGGTTVMTMM GGVHGAAGGG DGDYGPSPWR TDELGQTARK LGDPQHQWRG  360
GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25271314107B-MYB
1gv2_A7e-26271311104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096358
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096358_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406150.0BT040615.1 Zea mays full-length cDNA clone ZM_BFc0104E17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141174.10.0MYB transcription factor
TrEMBLB4FU270.0B4FU27_MAIZE; MYB transcription factor
STRINGGRMZM2G096358_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-80myb domain protein 62