PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G096016_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 192aa MW: 21052.7 Da PI: 10.5602 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 90.5 | 2.1e-28 | 71 | 129 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee..ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak ++ ++++ + srkpylheSRh hAlrR+Rg+gGrF GRMZM2G096016_P02 71 DEPVYVNAKQFNGILRRRLARAKRAAatDRRV-SGSRKPYLHESRHLHALRRARGTGGRF 129 79********************9877645666.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-30 | 69 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.527 | 70 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.7E-26 | 72 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-21 | 73 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-21 | 106 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MAAHPELLLL DRYQYHHHGR FDLTVGQSMV LNNDSAIAGH QIYGATAYYH PFYGAQALHG 60 RVLLPPAIAA DEPVYVNAKQ FNGILRRRLA RAKRAAATDR RVSGSRKPYL HESRHLHALR 120 RARGTGGRFL NTRSRDGDPE AGSAGKAARL QEEDRQADAV FLSSLASMAG GDATRWPSAP 180 SRGRGCCDLL KA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-16 | 71 | 131 | 2 | 61 | HAPB protein |
4g92_A | 2e-16 | 71 | 131 | 2 | 61 | HAPB protein |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G096016 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G096016_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 0.0 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152344.2 | 1e-137 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A1D6F9G6 | 1e-135 | A0A1D6F9G6_MAIZE; Nuclear transcription factor Y subunit A-10 | ||||
STRING | GRMZM2G096016_P01 | 1e-136 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.3 | 4e-22 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G096016_P02 |