PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096016_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 294aa    MW: 31336 Da    PI: 10.0998
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096016_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.54.6e-28173231158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee..ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep+YVNaKQ+++Il+RR +Rak ++  ++++ + srkpylheSRh hAlrR+Rg+gGrF
  GRMZM2G096016_P01 173 DEPVYVNAKQFNGILRRRLARAKRAAatDRRV-SGSRKPYLHESRHLHALRRARGTGGRF 231
                        79********************9877645666.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-30171234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.527172234IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-25174231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.4E-21175197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.4E-21208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNLQQEHLLF SVSRPASRPS AATTTGFQDH GLGGFQVIAT DGGAGPAAPW WAAAAPQGCA  60
AAKFPIGSPP SGGDPDLRRH ELRFVHDHES SSAPAGGASS AAMAAHPELL LLDRYQYHHH  120
GRFDLTVGQS MVLNNDSAIA GHQIYGATAY YHPFYGAQAL HGRVLLPPAI AADEPVYVNA  180
KQFNGILRRR LARAKRAAAT DRRVSGSRKP YLHESRHLHA LRRARGTGGR FLNTRSRDGD  240
PEAGSAGKAA RLQEEDRQAD AVFLSSLASM AGGDATRWPS APSRGRGCCD LLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-15173233261HAPB protein
4g92_A1e-15173233261HAPB protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096016
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096016_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682170.0EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152344.20.0nuclear transcription factor Y subunit A-10
TrEMBLA0A1D6F9G60.0A0A1D6F9G6_MAIZE; Nuclear transcription factor Y subunit A-10
STRINGGRMZM2G096016_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Representative plantOGRP1954822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-21nuclear factor Y, subunit A10