PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G095982_P01
Common NameLOB24, LOC103652793, ZEAMMB73_471562
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 413aa    MW: 43899.2 Da    PI: 5.5783
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G095982_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.1e-3888184197
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG++++lk+l+++++e   dam++l++++++ra+dPv G++ +il+l++ql+ + a
  GRMZM2G095982_P01  88 ACAACKYQRRKCNTDCPLAPYFPADQQERFLNAHRLFGVRKILKTLENISPELSADAMATLIFQSDMRAQDPVGGCYHLILSLERQLQIETA 179
                        7******************************************************************************************* PP

             DUF260  93 elall 97 
                        el+++
  GRMZM2G095982_P01 180 ELSAM 184
                        *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.31987188IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3588183IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTSSVSPAAA ASQSQLHITT TGTGTGSTAI ISPSSNQSTS NANARSSSSS SSSPHSASSP  60
PRARGPSTTG GTGSSGGSGS GSGCTNQACA ACKYQRRKCN TDCPLAPYFP ADQQERFLNA  120
HRLFGVRKIL KTLENISPEL SADAMATLIF QSDMRAQDPV GGCYHLILSL ERQLQIETAE  180
LSAMLQTLAL FGQATTTTTM PPDQGGGGTA GLDYTASSNL LHNAQQEVLY ALYKNKHEEA  240
DIVHSDNEVV RHHGGGGHGP NKDDHGRQQH QVLNYFYCNN ATASDDVDNM QQFHFNDSCA  300
AADKVDLTPP AGADEMRHHH QHLDENCQID HKDYFEIKAA AALVDDAFHM RQEVVDVSAE  360
VDMEDIKTVD VNNAGIGGVD IKAMAMNANV VDVTPQMAAE SSHCRLGLGF SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-208918312106LOB family transfactor Ramosa2.1
5ly0_B4e-208918312106LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G095982
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G095982_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277700.0KJ727770.1 Zea mays clone pUT5717 LOB transcription factor (LOB24) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678000.10.0uncharacterized protein LOC103652793
TrEMBLK7TYY80.0K7TYY8_MAIZE; LOB transcription factor
STRINGGRMZM2G095982_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-35LOB domain-containing protein 22