PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G095598_P01
Common NameLOC103646270, Zm.24658
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 320aa    MW: 34070 Da    PI: 5.4266
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G095598_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-082056437
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       r C+ ++ + ++l+C+ +  +lC+ C    H g    H
  GRMZM2G095598_P01 20 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GagsrH 56
                       68**************************999.435667 PP
2zf-B_box21.35.8e-0759100338
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         + C+ +e+ ++   C+ +   lC++C   +H+       H+
  GRMZM2G095598_P01  59 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplarrHE 100
                        679*****************************6567777776 PP
3CCT70.15.4e-24236279144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  GRMZM2G095598_P01 236 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 279
                        9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-81761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5231761IPR000315B-box-type zinc finger
PfamPF006435.6E-62056IPR000315B-box-type zinc finger
CDDcd000215.15E-92061No hitNo description
PROSITE profilePS501199.71257104IPR000315B-box-type zinc finger
PfamPF006433.7E-559101IPR000315B-box-type zinc finger
CDDcd000212.98E-760102No hitNo description
SMARTSM003365.2E-762104IPR000315B-box-type zinc finger
PfamPF062038.9E-18236278IPR010402CCT domain
PROSITE profilePS5101716.876236278IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGDEKSAGG APAYWGLGAR PCDACGAEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCASCDADIH SANPLARRHE RLHVAPFFGA LADAPKPFAS  120
AAPPKATDDD GSNEDEAASW LLPEPDHGQK EGATTEVFFA DSDPYLDLDF ARSMDEIKTI  180
GVQQSGSPEL DLAGTKLFYS DHSVNHSVSS SEAAVVPDAA SGMAPMVAVV SRGLEREARL  240
MRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTP GAGEDTLEEH EEMYSSAAAA  300
VAALMAPGGA DADYGVVPTY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.246580.0leaf| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G095598
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G095598_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278420.0KJ727842.1 Zea mays clone pUT5886 C2C2-CO-like transcription factor (COL11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669219.10.0zinc finger protein CONSTANS-LIKE 3 isoform X2
TrEMBLA0A1D6E7630.0A0A1D6E763_MAIZE; Zinc finger protein CONSTANS-LIKE 5
STRINGGRMZM2G095598_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-44CONSTANS-like 3