PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G095239_P01
Common NameSMH6
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 317aa    MW: 35174 Da    PI: 8.766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G095239_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       ++rWT eE+  l  +++++G g W+tI +          R+  ++k++w++
  GRMZM2G095239_P01  5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                       79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.487161IPR017930Myb domain
SuperFamilySSF466896.32E-15259IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-13556IPR009057Homeodomain-like
PfamPF002498.7E-7556IPR001005SANT/Myb domain
CDDcd116601.17E-19657No hitNo description
Gene3DG3DSA:1.10.10.102.8E-17120193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.4E-10120184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.01E-17120200IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.514121189IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-10126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000781Cellular Componentchromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVIV  60
STSSSRDKAK SALKRIRTIP KNNEHTMAIT RVTSDIDDEI VDEKPIVSLP SEAKNTSSSK  120
KSHRLDNIIM EAIKNLNEPT GSHRTTIANY IEEQYWPPSD FDHLLSAKLK DLSTSGKLIK  180
VNRKYRIAPS SPNSERRSPK MPLLEDVQRE PVKIWSDDTK TLTRSQVDAE LARMATMTAE  240
EASVAAARAV AEAEAIMAEA EAAAKEAEAA EAEAQAAQAF AEAAFLTLKN RNAGKLVIAL  300
IHASLCYILP CFISYHI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.171440.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G095239
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G095239_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620590.0BT062059.1 Zea mays full-length cDNA clone ZM_BFb0211A14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644292.10.0single myb histone 6 isoform X1
SwissprotC0HIA30.0SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1Q0ZI980.0A0A1Q0ZI98_MAIZE; Telomere repeat-binding factor 1
STRINGGRMZM2G095239_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Marian CO, et al.
    The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
    Plant Physiol., 2003. 133(3): p. 1336-50
    [PMID:14576282]
  2. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]