PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G095078_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 386aa MW: 40283.4 Da PI: 6.7432 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 75.6 | 6.4e-24 | 257 | 319 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+krerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+ GRMZM2G095078_P01 257 EREIKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 319 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 9.4E-8 | 125 | 234 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.4E-17 | 254 | 316 | No hit | No description |
SMART | SM00338 | 2.0E-22 | 257 | 321 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.6E-21 | 257 | 319 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.139 | 259 | 322 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.63E-11 | 260 | 315 | No hit | No description |
CDD | cd14702 | 4.64E-22 | 262 | 313 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 264 | 279 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MASSSDEQSK PPEPPAAAAV VTAAAPPQTH AEWVASLQAY YAAAGHPYAW PAQHLMAAAA 60 AGAHFGTPVP FPVYHPGAAA AYYAHASMAA GVPYPTCEAV PAVALPTVPE GKGKGKGGGA 120 SPEKGSSGAP SGEDASRSDD SGSDESSETR DDDTDHKDSS APKKRKSGNT SAEGEPSQAT 180 VVRYAAVESP YPAKGRSASK LPVSAPGRAA LPSATPNLNI GMDIWNASPA LAVPAVQGEV 240 SPGLALARRD GVTQLDEREI KRERRKQSNR ESARRSRLRK QQECEELARK VADLTTENSA 300 LRAELDNLKK ACQDMEAENS RLLGGVADAQ VPSVTTTLGM SIEPPKLQLQ LQQHHDEEGQ 360 LHKKSSNNSN GNCAGGSHKP EANTTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 279 | RRSRLRK |
2 | 273 | 280 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.75910 | 0.0 | ear| embryo| meristem| ovary| pericarp| pollen| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G095078 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G095078_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX469923 | 0.0 | JX469923.1 Zea mays subsp. mays clone UT3179 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105491.1 | 0.0 | maize Em binding protein-1a | ||||
Swissprot | P25032 | 1e-64 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | B4FC61 | 0.0 | B4FC61_MAIZE; EM binding protein 1-like protein | ||||
TrEMBL | K4JE66 | 0.0 | K4JE66_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G095078_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 | Representative plant | OGRP12753 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 2e-31 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G095078_P01 |