PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G094935_P01
Common NameZm.82145
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-PHD
Protein Properties Length: 692aa    MW: 76627.7 Da    PI: 4.6568
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G094935_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.3e-125746131352
                        HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        + L e+F+ ++yps++ +e LA++lgLt  qV  WF NrR
  GRMZM2G094935_P01 574 QKLHEHFKTQPYPSRSLKESLAEELGLTFHQVNRWFENRR 613
                        789************************************* PP
2PHD44.82.8e-15211266151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ Cg+  ++ +++++lCdg C++ fH++Cl+++l++e++p+g   wlC+ C++k
  GRMZM2G094935_P01 211 FCATCGSknATLGNDIILCDGaCDRGFHQNCLNPPLRTEDIPMGdeGWLCPACDCK 266
                        7******65555********66**********************99*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.93E-13201269IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.8E-13208266IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.217209266IPR019787Zinc finger, PHD-finger
CDDcd155044.76E-26211263No hitNo description
PfamPF006281.1E-12211266IPR019787Zinc finger, PHD-finger
SMARTSM002492.1E-11211264IPR001965Zinc finger, PHD-type
PROSITE patternPS013590212263IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.6E-14553613IPR009057Homeodomain-like
PROSITE profilePS5007114.333559619IPR001356Homeobox domain
SuperFamilySSF466896.42E-13560614IPR009057Homeodomain-like
SMARTSM003891.4E-12561623IPR001356Homeobox domain
CDDcd000867.13E-12562613No hitNo description
PfamPF000461.3E-9574613IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MEKKTVHVPA EGNGEIENGT SSSQNPETLE HPVLLSASQT VPNNLGIRKN YKRAANRGKK  60
GSQGLTGQAY TLRSSDIDVR VLRSTSGSKT TSTEHVQPPG QPAAKRRKRS RASNKNSTDE  120
FSQIRKRVRY ILNRMNYEQS LIEAYASEGW KNQSLDKIRP EKELERAKSE ILRCKLRIRE  180
VFQNIDSLLS KGKIDESLFD SEGEISCEDI FCATCGSKNA TLGNDIILCD GACDRGFHQN  240
CLNPPLRTED IPMGDEGWLC PACDCKLDCI DLINELQGSD ISIEDPWEKV FPEAAAMANS  300
SKQDEAFDLP SDDSDDNDFD PNMPEEHVAS KEEGSSEEEE DDDGGSDSDD SDFLTCSDDL  360
EPLIDKKNVD DLGLPSEDSE DDDYDPAGPD SDKDVEKKSN SDESDFMSDS DDFCKEIKKS  420
GGHDEVSSPP LPDVKVGDME KNTAQSNTTS SADDPMETEI DQSVVLPVSR RRQAERLDYK  480
RLYDEAYGEA SSDSSDEEEW SGKNTPIKSN EEGEVGSPAG KGSRVAHHNE LTTQNTKESL  540
HSLHGSVDEK HGDLTSNGSN IKDRKGHFGP VISQKLHEHF KTQPYPSRSL KESLAEELGL  600
TFHQVNRWFE NRRHFARLAS SRKGISPDKH SPQNTNSPVT PSMQPKEPEG TVMEESNVCI  660
NRDATISKKA VSSKVGSRKN LSKSSPKSRV RS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.821450.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G094935
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in kernels, leaves and shoots but not in roots.
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G094935_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX924280.0X92428.1 Z.mays mRNA for Hox1b protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105918.20.0HOX1B protein
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A1D6MAV30.0A0A1D6MAV3_MAIZE; Homeobox2
STRINGGRMZM2G094935_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-83Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]