PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G094892_P01
Common NameLOC100382992
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 396aa    MW: 40372.3 Da    PI: 6.3099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G094892_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-05294334954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+r+ +++  L++l+P        +++ a++L +A  Y+k L
  GRMZM2G094892_P01 294 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAAGYLKFL 334
                        599*****************95.....59***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.827285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-12291345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-8291339No hitNo description
SMARTSM003536.3E-10291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8291345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEDFGGWNMQ YAAELCLPSR RDDDDDGLLG DFLGGGGLDI RSDHGGLNLP SSHPAVQNLV  60
PCHGGVSLSV SDAFMGLDTA DMLASVTGAL DCSLLDTFAC GSDAVVVAEE PAAQPTASSN  120
AFSGYSSTTG GNYGNISSGE SNTYGGSGGG HDTEVASPTC ASKRKLAGKY PAIAAASATA  180
TTKTAEGQVA APRRGTKRDS ATSSSSTSAT VAGHGGGNHA AGGGGSSSVG DGNGYEPDSE  240
AIAQVKEMIY RAAAMRPVHQ LVCGAAGGEP PSSSQNKPRR RNVRISSDPQ TVAARLRRER  300
VSERLRVLQR LVPGGSRMDT ASMLDEAAGY LKFLKSQVKA LERANPSSNG GYNDSSFLPQ  360
SYTGCLGVDG GTSAAFGSDG AIGGYGYVKP GRNMHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G094892
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G094892_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663020.0BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648092.10.0putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_008648093.10.0putative HLH DNA-binding domain superfamily protein isoform X1
SwissprotA0A0P0WQ904e-63LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLC0PDD30.0C0PDD3_MAIZE; Transcription factor bHLH87
STRINGGRMZM2G094892_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-27bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]