PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G094081_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | VOZ | ||||||||
Protein Properties | Length: 309aa MW: 35202.9 Da PI: 8.5223 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 345.1 | 3.2e-106 | 4 | 227 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgke.vgipec.....egaata 86 +psafl+pkcalwdc rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lf alsak k+ +g + + + GRMZM2G094081_P01 4 APSAFLKPKCALWDCLRPAVGSERWHDYCSMYHADLAVQEeGPPGTMPVIRPRGIDLKDGPLFTALSAKNIRKKmLGSLSVkelplQSLRGM 95 69************************************9879**************************976554156444311111345567 PP VOZ 87 kspwn.aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinel 177 + p+ aelfdl ++ege+irewlffdkprraf sgnrkqrsl dy grgwhesrkq mk+fgglkrsyymdpqps+s+ewhlyeyeine+ GRMZM2G094081_P01 96 HLPFCtIAELFDLYIFEGESIREWLFFDKPRRAFVSGNRKQRSLLDYGGRGWHESRKQAMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINEC 187 78885269************************************************************************************ PP VOZ 178 dalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 da+alyrle+k++d+kk++k+k+ +++++++q++++rl+a GRMZM2G094081_P01 188 DAFALYRLEFKSSDAKKTVKSKLVCNPMNEIQQQMVRLSA 227 **************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MTSAPSAFLK PKCALWDCLR PAVGSERWHD YCSMYHADLA VQEEGPPGTM PVIRPRGIDL 60 KDGPLFTALS AKNIRKKMLG SLSVKELPLQ SLRGMHLPFC TIAELFDLYI FEGESIREWL 120 FFDKPRRAFV SGNRKQRSLL DYGGRGWHES RKQAMKDFGG LKRSYYMDPQ PSNSYEWHLY 180 EYEINECDAF ALYRLEFKSS DAKKTVKSKL VCNPMNEIQQ QMVRLSANSP VDNKRTARGR 240 PHANPTDVDT NIYSVPNTTA QANVPNAFQP GSEVDQMTYL NGSVVYGPHL SYGYSTERSY 300 FYWNSADGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27097 | 0.0 | leaf| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G094081 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G094081_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055705 | 0.0 | BT055705.1 Zea mays full-length cDNA clone ZM_BFb0126K15 mRNA, complete cds. | |||
GenBank | BT067196 | 0.0 | BT067196.1 Zea mays full-length cDNA clone ZM_BFb0282C22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146575.1 | 0.0 | Transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 7e-90 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1D6MUN7 | 0.0 | A0A1D6MUN7_MAIZE; Transcription factor VOZ1 | ||||
STRING | GRMZM2G094081_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 3e-92 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G094081_P01 |
Publications ? help Back to Top | |||
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