PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G094067_P01
Common NameLOC100284512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 225aa    MW: 24476 Da    PI: 6.5758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G094067_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.42.9e-3681361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 
                        lppGf+F P+de+lvv++L++k+++ +++  ++++++ +++++Pw+L+ ++ +  ++wyfFs++++++a+    ++r+  sgyW+  g d++
  GRMZM2G094067_P01   8 LPPGFHFFPSDEDLVVHFLRRKAANLPCRP-DIVPTILLHRYDPWELNGTALQAGNQWYFFSSHAHAHAHsAAGQTRTSPSGYWNPAGADET 98 
                        79*************************999.89**************965566789********9999873567888999**********99 PP

                NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+ + +g++vglkktLvf +g+  +g +t+Wvmhey+l
  GRMZM2G094067_P01  99 VVLAsSGRVVGLKKTLVFCTGEPFRGFRTNWVMHEYHL 136
                        998768999****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-445146IPR003441NAC domain
PROSITE profilePS5100543.6338189IPR003441NAC domain
PfamPF023651.2E-219136IPR003441NAC domain
SuperFamilySSF1019414.71E-44177187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGGGATNLPP GFHFFPSDED LVVHFLRRKA ANLPCRPDIV PTILLHRYDP WELNGTALQA  60
GNQWYFFSSH AHAHAHSAAG QTRTSPSGYW NPAGADETVV LASSGRVVGL KKTLVFCTGE  120
PFRGFRTNWV MHEYHLQDGP AGCNVGGSSG ATTPSSSSSS GSSRRSQRKR VHSSTESINS  180
WVICRVFESS CGSQVSFHDE GTELSCLDEV FLSLDDYDEV SLPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-33719419173NAC domain-containing protein 19
3swm_B4e-33719419173NAC domain-containing protein 19
3swm_C4e-33719419173NAC domain-containing protein 19
3swm_D4e-33719419173NAC domain-containing protein 19
3swp_A4e-33719419173NAC domain-containing protein 19
3swp_B4e-33719419173NAC domain-containing protein 19
3swp_C4e-33719419173NAC domain-containing protein 19
3swp_D4e-33719419173NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G094067
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G094067_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643090.0BT064309.1 Zea mays full-length cDNA clone ZM_BFc0158F06 mRNA, complete cds.
GenBankEU9686430.0EU968643.1 Zea mays clone 323029 NAC domain-containing protein 78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150879.11e-167NAC domain-containing protein 78
TrEMBLB6TUH81e-166B6TUH8_MAIZE; NAC domain-containing protein 104
STRINGGRMZM2G094067_P011e-167(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-57xylem NAC domain 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]