PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G093895_P01 | ||||||||
Common Name | LOC100384575, TCP12, ZEAMMB73_979189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 405aa MW: 41090.9 Da PI: 6.1047 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.8 | 1.1e-39 | 101 | 208 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a+++ ++ GRMZM2G093895_P01 101 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAPAARaapfp 192 789************************************************************99999766333333333332222233333 PP TCP 89 ..............kaaksaakskksqksaa 105 + + GRMZM2G093895_P01 193 alalhphhhhqaapA---------------H 208 322222221111110...............1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-35 | 106 | 210 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.31 | 106 | 160 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MDHGGGGGGG GAPSSSNSAG GAAAGGGATA GGASGGRGSE HHPFYYAGPA ASNSGVPQAQ 60 QQPSPFAGAL AIAPVPEQPQ PSSADKKALV PAAPAAAGPV VAKRPSKDRH TKVDGRGRRI 120 RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAILAA TGTGTIPANY SSLNISIRSG 180 AAAPAARAAP FPALALHPHH HHQAAPAHDM SAMMAGYHHH LLPPQPQPQE DPSAGDAYMR 240 KRYREDLFKE DDERQDPSAP KAREQQAATP PPQPQPSATM WAAAAPSGGF WMLPVSASSA 300 AAARPAEQPM WSFSGGGGTG TVQAPLQFMS RASYPGGAAG GGGGAMSDTN LGMLAALNAY 360 NRGGSEEQQQ TEGEQQHGGD GGVNDDGDED GDDSAEENNG NNSSQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85085 | 0.0 | ear| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G093895 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G093895_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083691 | 0.0 | BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170554.1 | 0.0 | uncharacterized protein LOC100384575 | ||||
Swissprot | Q53PH2 | 2e-63 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | C4IYP4 | 0.0 | C4IYP4_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G093895_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 1e-43 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G093895_P01 |
Entrez Gene | 100384575 |