PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093789_P02
Common Namesi687017b11a
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 351aa    MW: 40117.2 Da    PI: 6.3605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093789_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-1855102148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEd++l+d+v+ +G g+W+++ +   ++R++k+c++rw ++l
  GRMZM2G093789_P02  55 KGPWSPEEDKRLKDYVEVHGAGNWNKVQQNARLNRCGKSCRLRWTNHL 102
                        79*******************************************996 PP
2Myb_DNA-binding40.56.2e-13108151146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + ++ +eE+e++++++ + G++ W+  a++++ gRt++++k++w++
  GRMZM2G093789_P02 108 KEPFNAEEEEKIIKLHIRRGPK-WSMMASYLP-GRTDNEIKNFWNT 151
                        57899***************99.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.88850106IPR017930Myb domain
SuperFamilySSF466898.79E-3052149IPR009057Homeodomain-like
SMARTSM007172.0E-1554104IPR001005SANT/Myb domain
PfamPF002496.2E-1755102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2456109IPR009057Homeodomain-like
CDDcd001676.89E-1257102No hitNo description
SMARTSM007179.8E-12107155IPR001005SANT/Myb domain
PROSITE profilePS5129416.777107157IPR017930Myb domain
PfamPF002491.4E-10108151IPR001005SANT/Myb domain
CDDcd001674.33E-9110153No hitNo description
Gene3DG3DSA:1.10.10.603.3E-21110156IPR009057Homeodomain-like
Gene3DG3DSA:2.40.30.301.6E-5293336IPR023465Riboflavin kinase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009231Biological Processriboflavin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0008531Molecular Functionriboflavin kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTVVRVDENP APDGENSPLD DEYVSADDEH VDDEDKETDS IDDYENPSGT PQMKKGPWSP  60
EEDKRLKDYV EVHGAGNWNK VQQNARLNRC GKSCRLRWTN HLRPDLKKEP FNAEEEEKII  120
KLHIRRGPKW SMMASYLPGR TDNEIKNFWN TRKRRKQRCG SPLYPEYMLS QVSHKDMDFE  180
TLGESHGKKR SNECSKEKVV DVQELVDELI VFEHLDYGKD IVFPIRPLKC HASTGSVQIS  240
GDIRKTFCPT DLNYVMTKNQ SVPVGSAIGS GYPLSVPLNM MPVLKLKLQT YVQANFPSLE  300
SLIERIHEDG RVAEKTLDLP MYAKYKDSPY LRNPSKHGST IGGTQAEMDS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-255115623127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RKRRKQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809390.0aerial organ| cell culture| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093789
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093789_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419360.0BT041936.1 Zea mays full-length cDNA clone ZM_BFb0083A23 mRNA, complete cds.
GenBankKJ7268990.0KJ726899.1 Zea mays clone pUT3444 MYB transcription factor (MYB59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141727.10.0uncharacterized LOC100273858
RefseqXP_008647571.10.0uncharacterized protein LOC100273858 isoform X1
TrEMBLA0A3L6EA860.0A0A3L6EA86_MAIZE; Transcription factor GAMYB
TrEMBLB4FXU80.0B4FXU8_MAIZE; MYB transcription factor
STRINGGRMZM2G093789_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-49myb domain protein 101