PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093789_P01
Common NameMYB59, si687017b11a
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 440aa    MW: 49137.8 Da    PI: 4.9703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093789_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-1855102148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEd++l+d+v+ +G g+W+++ +   ++R++k+c++rw ++l
  GRMZM2G093789_P01  55 KGPWSPEEDKRLKDYVEVHGAGNWNKVQQNARLNRCGKSCRLRWTNHL 102
                        79*******************************************996 PP
2Myb_DNA-binding40.18.5e-13108151146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + ++ +eE+e++++++ + G++ W+  a++++ gRt++++k++w++
  GRMZM2G093789_P01 108 KEPFNAEEEEKIIKLHIRRGPK-WSMMASYLP-GRTDNEIKNFWNT 151
                        57899***************99.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.88850106IPR017930Myb domain
SuperFamilySSF466891.34E-2952149IPR009057Homeodomain-like
SMARTSM007172.0E-1554104IPR001005SANT/Myb domain
PfamPF002498.5E-1755102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2456109IPR009057Homeodomain-like
CDDcd001672.42E-1257102No hitNo description
SMARTSM007179.8E-12107155IPR001005SANT/Myb domain
PROSITE profilePS5129416.777107157IPR017930Myb domain
PfamPF002491.9E-10108151IPR001005SANT/Myb domain
CDDcd001671.71E-9110153No hitNo description
Gene3DG3DSA:1.10.10.604.6E-21110156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009231Biological Processriboflavin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0008531Molecular Functionriboflavin kinase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MTVVRVDENP APDGENSPLD DEYVSADDEH VDDEDKETDS IDDYENPSGT PQMKKGPWSP  60
EEDKRLKDYV EVHGAGNWNK VQQNARLNRC GKSCRLRWTN HLRPDLKKEP FNAEEEEKII  120
KLHIRRGPKW SMMASYLPGR TDNEIKNFWN TRKRRKQRCG SPLYPEYMLS QVSHKDMDFE  180
TLGESHGKKR SNECSKEKVV DVQELVDELI VFEHLDYGKD IVFPIRPLKC HASTGSVQIS  240
GDIRKTFCPT DLNYVMTKNQ SVPVGSAIGS GYPVYGGRLS TSGTIFGSIQ TEIPSIQSSS  300
YSPSNDWLAQ CPSACIEQRI PMECNTISQS KAYLMMHSSS AFCAPEHDAC SETQAPDLCS  360
GSDVVFDPSQ CYPVASFSDL GISDTPLTSG FLNDITLASL LNVNLKDLSH LNRQEPTNDT  420
SLGGASLLNA NLKDQSHLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-275115623127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RKRRKQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809390.0aerial organ| cell culture| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093789
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093789_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419360.0BT041936.1 Zea mays full-length cDNA clone ZM_BFb0083A23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141727.10.0uncharacterized LOC100273858
RefseqXP_008647571.10.0uncharacterized protein LOC100273858 isoform X1
TrEMBLA0A3L6EA860.0A0A3L6EA86_MAIZE; Transcription factor GAMYB
TrEMBLB4FXU80.0B4FXU8_MAIZE; MYB transcription factor
STRINGGRMZM2G093789_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-49myb domain protein 101