PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G093725_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 23026.6 Da PI: 10.7817 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.1e-39 | 84 | 144 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrn+PvGgg+r+nk+++ GRMZM2G093725_P01 84 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNIPVGGGCRRNKRTK 144 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-36 | 68 | 138 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-32 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 90 | 126 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MATLSGTGGG GGGNVDAHAH HHQLPSMPPP ARVGALMAPR PNMAAVVAAS GGSTSDGSGP 60 TGGGSVIRSG SMTERARLAK IPQPEPGLKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR 120 YWTRGGALRN IPVGGGCRRN KRTKSSNSSS ATSASRASGT SSSTSSTATG GNSAASIKLP 180 HQGHGGQLPF LASLHHPFTD GDHHYNTGAS RLGFPGLSSL DPMD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G093725 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G093725_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062505 | 0.0 | BT062505.1 Zea mays full-length cDNA clone ZM_BFb0307A23 mRNA, complete cds. | |||
GenBank | BT067417 | 0.0 | BT067417.1 Zea mays full-length cDNA clone ZM_BFc0042G08 mRNA, complete cds. | |||
GenBank | EU956599 | 0.0 | EU956599.1 Zea mays clone 1567744 hypothetical protein mRNA, complete cds. | |||
GenBank | JX428452 | 0.0 | JX428452.1 Zea mays subsp. mays clone pUT3046 DOF27 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143068.1 | 2e-89 | Dof zinc finger protein DOF3.6 | ||||
Refseq | XP_008669607.1 | 2e-89 | dof zinc finger protein DOF3.6 isoform X1 | ||||
TrEMBL | A0A1D6L9X9 | 1e-160 | A0A1D6L9X9_MAIZE; Dof zinc finger protein DOF3.6 | ||||
STRING | GRMZM2G093725_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 7e-42 | DNA binding with one finger 2.4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G093725_P01 |