PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093305_P02
Common NameLOC100194357
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 287aa    MW: 30788.4 Da    PI: 8.8122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093305_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-054164123
                       EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                       ++C+ Cg++  r+ +L+ H+ + H
  GRMZM2G093305_P02 41 FPCKVCGEVLGRPQLLELHQAMkH 64
                       89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804364IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-1266286No hitNo description
Gene3DG3DSA:3.90.228.103.0E-999285IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMSPLSVRSL SATPFPSSPQ QKLLQASRQS FRSFAARGDV FPCKVCGEVL GRPQLLELHQ  60
AMKHSLSELT HLDSSLNIIR MIFLAGWRPA ASGAGAGAGA GEAPAVRRVL RIHHNPRALA  120
RFEEYRDLVR ARAARRCGGE GAVVEERCIA DGNERLRFHC STMLCSLGGG VCGSPYCCVC  180
STLRHGFAGK QADVDGIATY ASAWTAHASL PADVEREFAF LQVRRAMLVC RVVAGRVARG  240
PADDKVAYDS MVPVRGGVGG GTGDDVELLV YNPRAVLPCF VILYSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.875370.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093305
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093305_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368840.0BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds.
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132864.10.0nucleic acid binding protein precursor
TrEMBLB4FIE60.0B4FIE6_MAIZE; Uncharacterized protein
TrEMBLB6SPE60.0B6SPE6_MAIZE; Nucleic acid binding protein
STRINGGRMZM2G093305_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.15e-52C2H2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]