PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G092409_P01
Common NameLOC100272929
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 428aa    MW: 46309.5 Da    PI: 9.5053
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G092409_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.16.4e-29191289298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        ++ rlws  Deiv+L+Gl++++ak+g+   ++ di+ f   +++++s++v+ +ql++K+rrLK+K+++  ++ k+g++p++ ++h+q+++e+
  GRMZM2G092409_P01 191 RPTRLWSLRDEIVILRGLVTYRAKRGVlpGAMYDISMFQGHIQSELSVNVTPTQLSDKVRRLKQKYNQLASRGKNGRDPDLPTQHEQSVYEI 282
                        678************************555566*********************************************************** PP

             DUF573  92 skkiWgs 98 
                         kk+Wg+
  GRMZM2G092409_P01 283 GKKVWGT 289
                        *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-26193288IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAPKRPAAAA AAASGSASEA SDAEADVGHQ PSSPSPSKTP PTNPNPKSAA AGPAEDSTAA  60
GSDSEAAYDS DADHRPAHRK AAVAASPSRK PRSPRPRSRS RSPDAASYSD GAASDADADP  120
AARDGADSAD DGNASPLALP RLSRAEAAAI KPLSSRPMDP PRRSMVHSFS ELRSKRPRSA  180
AVPSSVEQLK RPTRLWSLRD EIVILRGLVT YRAKRGVLPG AMYDISMFQG HIQSELSVNV  240
TPTQLSDKVR RLKQKYNQLA SRGKNGRDPD LPTQHEQSVY EIGKKVWGTS TGGDGYEIGG  300
DSQEEHEIGE SDEDVESGWD ERARKNRRLM PITMANGHGS GFGAGRGKFD VEKGKDAYPY  360
LWETVEDLSK EHPNGVAFKK AFELIEGARA RGMEEKLRKF RLTEIRHQLR RMELMKETVK  420
MVLDALEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.162680.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G092409
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G092409_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398010.0BT039801.1 Zea mays full-length cDNA clone ZM_BFc0045M21 mRNA, complete cds.
GenBankBT0410090.0BT041009.1 Zea mays full-length cDNA clone ZM_BFc0166A12 mRNA, complete cds.
GenBankEU9681860.0EU968186.1 Zea mays clone 316365 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140853.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLB4FRR30.0B4FRR3_MAIZE; GLABROUS1 enhancer-binding protein-like
STRINGGRMZM2G092409_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-15DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]