PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G092363_P01
Common NameLOC100281883, Orphan271, ZEAMMB73_574781
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 278aa    MW: 28163.2 Da    PI: 6.5004
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G092363_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-061960642
           zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ ++   +  +C  +   lC  C ++ H        H++vpl
  GRMZM2G092363_P01 19 CAVCGGA-AVVYCAADAAALCSPCDTAVHAAnllasrHERVPL 60
                       9*****9.*********************66899999999986 PP
2CCT65.41.6e-22187230144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr++RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  GRMZM2G092363_P01 187 REARVQRYREKRERRKFQKTIRYASRKAYAEARPRIKGRFVKRA 230
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
SMARTSM003361.5E-91460IPR000315B-box-type zinc finger
PROSITE profilePS501199.3431960IPR000315B-box-type zinc finger
CDDcd000216.37E-62960No hitNo description
PfamPF062032.1E-17187229IPR010402CCT domain
PROSITE profilePS5101716.42187229IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRSEGSTSP AAGGAACACA VCGGAAVVYC AADAAALCSP CDTAVHAANL LASRHERVPL  60
SMVTAASGVY DDDLFAPDDI DAASSWASAP AQGQGSPQNG SSSASFTTGD SGAEGRGLFD  120
LLSDVDFAAC VTGGGGYLPD GVAPVVHHGA APLWAQPGLA AAAWTATWSP AVVVPGAAVV  180
AAAAAEREAR VQRYREKRER RKFQKTIRYA SRKAYAEARP RIKGRFVKRA AGTSSSSSSG  240
AGTSDSIDAA AKFWLSFSDD ARDGFFVDAG AYGVVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.122970.0cell culture| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G092363
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G092363_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636540.0BT063654.1 Zea mays full-length cDNA clone ZM_BFc0090K03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148275.10.0CONSTANS-like protein CO8
TrEMBLB6SZU80.0B6SZU8_MAIZE; CONSTANS-like protein CO8
STRINGGRMZM2G092363_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Representative plantOGRP1297945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.18e-10CONSTANS-like 5
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]